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Structural insight into bacterial co-transcriptional translation initiation

Yokoyama, T.; Murayama, Y.; Uchikubo-Kamo, T.; Tomabechi, Y.; Nagao, A.; Suzuki, T.; Shirouzu, M.; Sekine, S.-i.

2024-03-21 biochemistry
10.1101/2024.03.19.585385 bioRxiv
Show abstract

In bacteria, transcription and translation are tightly coupled, forming a transcription-translation complex (TTC) between RNA polymerase (RNAP) and the ribosome. As nascent mRNA emerging from RNAP is susceptible to ribonuclease digestion, undesired RNA folding, and R-loop formation, immediate TTC formation is important. Here, we report the cryo-electron microscopy structures that capture the translation initiation complex assembly on transcribing RNAP. As a short mRNA emerging from RNAP, the 30S ribosomal subunit binds the RNAP on its inter-subunit side, interacting with the mRNA 5-region and the initiator tRNA. The RNAP could relocate to the canonical mRNA-entry site of 30S, threading the mRNA into a path formed between RNAP and 30S. The subsequent 50S joining establishes a TTC. These structures illustrate the transcription-coupled translation initiation, while protecting mRNA. One-Sentence SummaryCryo-EM captures the ribosome assembly on transcribing RNA polymerase in the presence of translation initiation factors.

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