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Assessment of Remediation Through Measuring Nuclear Respiratory Factor 1 (nrf1) Environmental Stressor Transcriptomic Gene Signatures

Morales, J. C.; Deoraj, A.; Felty, Q.; Lagos, L.; Yoo, C.; Roy, D.

2024-02-23 genomics
10.1101/2024.02.21.581481 bioRxiv
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Withdrawal StatementThis manuscript has been withdrawn by the authors as it was submitted and made public without the full consent of all the authors. Therefore, the authors do not wish this work to be cited as reference for the project. If you have any questions, please contact the corresponding author.

Matching journals

The top 4 journals account for 50% of the predicted probability mass.

1
Environment International
○ 43 papers in training set
Top 0.1%
24.3%
Similar papers in this journal
2
Journal of Hazardous Materials
○ 21 papers in training set
Top 0.1%
14.0%
Similar papers in this journal
3
PLOS ONE
● 5266 papers in training set
Top 20%
8.6%
Similar papers in this journal
4
Science of The Total Environment
○ 186 papers in training set
Top 0.5%
7.3%
Similar papers in this journal
50% of probability mass above
5
Environmental Research
○ 49 papers in training set
Top 0.2%
4.7%
Similar papers in this journal
6
Scientific Reports
○ 3612 papers in training set
Top 27%
3.7%
7
Environmental Science & Technology
● 64 papers in training set
Top 0.4%
3.5%
8
PeerJ
◐ 308 papers in training set
Top 3%
3.0%
9
Applied and Environmental Microbiology
● 339 papers in training set
Top 3%
1.9%
10
Scientific Data
○ 209 papers in training set
Top 2%
1.6%
11
Heliyon
○ 152 papers in training set
Top 5%
1.2%
12
PLOS Global Public Health
● 344 papers in training set
Top 6%
1.2%
13
Global Change Biology
○ 78 papers in training set
Top 1%
1.2%
14
Chemosphere
○ 17 papers in training set
Top 0.2%
1.1%
15
Environmental Pollution
○ 37 papers in training set
Top 1.0%
0.9%
16
One Health
○ 29 papers in training set
Top 0.5%
0.9%
17
ACS Chemical Neuroscience
● 67 papers in training set
Top 2%
0.7%
18
International Journal of Environmental Research and Public Health
○ 128 papers in training set
Top 5%
0.7%
19
Nature Communications
○ 5641 papers in training set
Top 57%
0.7%
20
Biology Open
● 156 papers in training set
Top 4%
0.7%
21
Frontiers in Plant Science
○ 256 papers in training set
Top 4%
0.7%
22
Ecotoxicology and Environmental Safety
○ 10 papers in training set
Top 0.4%
0.5%
23
Water Research
○ 79 papers in training set
Top 1%
0.5%
24
Frontiers in Microbiology
○ 427 papers in training set
Top 9%
0.5%
25
Genes
○ 144 papers in training set
Top 5%
0.5%

"Similar papers" are the closest papers from that journal in the model's embedding space. They show what the match is built on, but the ranking comes mostly from a classifier over the whole training set, not from these examples alone.