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Gammaherpesvirus infection alters transfer RNA splicing and triggers tRNA cleavage

Manning, A. C.; Bashir, M. M.; Jimenez, A. C.; Upton, H. E.; Collins, K.; Lowe, T. M.; Tucker, J. M.

2024-02-17 microbiology
10.1101/2024.02.16.580780 bioRxiv
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Withdrawal statementThe authors have withdrawn this manuscript due to a duplicate posting of manuscript number BIORXIV/2024/592122. Therefore, the authors do not wish this work to be cited as reference for the project. If you have any questions, please contact the corresponding author. The correct preprint can be found at doi: https://doi.org/10.1101/2024.05.01.592122.

Matching journals

The top 6 journals account for 50% of the predicted probability mass.

1
Nature Communications
○ 5641 papers in training set
Top 13%
13.3%
Similar papers in this journal
2
eLife
● 5828 papers in training set
Top 6%
13.1%
Similar papers in this journal
3
Nucleic Acids Research
◐ 1281 papers in training set
Top 2%
8.0%
Similar papers in this journal
4
RNA
● 189 papers in training set
Top 0.3%
6.8%
Similar papers in this journal
5
The EMBO Journal
○ 309 papers in training set
Top 0.4%
6.4%
Similar papers in this journal
6
PLOS Biology
● 486 papers in training set
Top 0.4%
5.6%
50% of probability mass above
7
Nature Microbiology
○ 155 papers in training set
Top 0.5%
5.6%
8
Cell Reports
○ 1498 papers in training set
Top 9%
4.4%
9
PLOS Pathogens
● 820 papers in training set
Top 4%
3.3%
10
Proceedings of the National Academy of Sciences
● 2444 papers in training set
Top 18%
2.8%
11
mBio
● 833 papers in training set
Top 6%
2.5%
12
Nature
○ 645 papers in training set
Top 5%
2.4%
13
Cell
○ 431 papers in training set
Top 4%
2.4%
14
Molecular Cell
○ 350 papers in training set
Top 3%
2.2%
15
Genome Biology
○ 637 papers in training set
Top 5%
2.2%
16
Science Advances
● 1243 papers in training set
Top 22%
1.5%
17
Science
● 477 papers in training set
Top 6%
1.4%
18
PLOS Genetics
● 862 papers in training set
Top 8%
1.4%
19
Molecular Biology and Evolution
◐ 542 papers in training set
Top 4%
1.1%
20
Cell Host & Microbe
126 papers in training set
Top 2%
0.7%
21
Philosophical Transactions of the Royal Society B: Biological Sciences
● 72 papers in training set
Top 2%
0.6%
22
PLOS ONE
● 5266 papers in training set
Top 61%
0.6%
23
EMBO Reports
○ 263 papers in training set
Top 8%
0.6%
24
Journal of Experimental Medicine
● 119 papers in training set
Top 3%
0.6%

"Similar papers" are the closest papers from that journal in the model's embedding space. They show what the match is built on, but the ranking comes mostly from a classifier over the whole training set, not from these examples alone.