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NF-κB Signaling is Required for X-Chromosome Inactivation Maintenance Following T cell Activation

Forsyth, K. S.; Toothacre, N. E.; Jiwarjka, N.; Driscoll, A. M.; Shallberg, L. A.; Cunningham-Rundles, C.; Barmettler, S.; Farmer, J. R.; Verbsky, J.; Routes, J.; Beiting, D. P.; Romberg, N.; May, M. J.; Anguera, M.

2024-02-12 immunology
10.1101/2024.02.08.579505 bioRxiv
Show abstract

X Chromosome Inactivation (XCI) is a female-specific process which balances X-linked gene dosage between sexes. Unstimulated T cells lack cytological enrichment of Xist RNA and heterochromatic modifications on the inactive X chromosome (Xi), and these modifications become enriched at the Xi after cell stimulation. Here, we examined allele-specific gene expression and the epigenomic profiles of the Xi following T cell stimulation. We found that the Xi in unstimulated T cells is largely dosage compensated and is enriched with the repressive H3K27me3 modification, but not the H2AK119-ubiquitin (Ub) mark, even at promoters of XCI escape genes. Upon CD3/CD28-mediated T cell stimulation, the Xi accumulates H2AK119-Ub and H3K27me3 across the Xi. Next, we examined the T cell signaling pathways responsible for Xist RNA localization to the Xi and found that T cell receptor (TCR) engagement, specifically NF-{kappa}B signaling downstream of TCR, is required. Disruption of NF-{kappa}B signaling, using inhibitors or genetic deletions, in mice and patients with immunodeficiencies prevents Xist/XIST RNA accumulation at the Xi and alters expression of some X-linked genes. Our findings reveal a novel connection between NF-{kappa}B signaling pathways which impact XCI maintenance in female T cells.

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