scMicrobe PTA: Near Complete Genomes From Single Bacterial Cells
Bowers, R. M.; Gonzalez-Pena, V.; Wardhani, K.; Goudeau, D.; Blow, M. J.; Udwary, D.; Klein, D.; Vill, A. C.; Brito, I. L.; Woyke, T.; Malmstrom, R.; Gawad, C.
Show abstract
Microbial genomes produced by single-cell amplification are largely incomplete. Here, we show that primary template amplification (PTA), a novel single-cell amplification technique, generated nearly complete genomes from three bacterial isolate species. Furthermore, taxonomically diverse genomes recovered from aquatic and soil microbiomes using PTA had a median completeness of 81%, whereas genomes from standard amplification approaches were usually <30% complete. PTA-derived genomes also included more associated viruses and biosynthetic gene clusters.
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