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Discovery and engineering of the antibody response against a prominent skin commensal

Bousbaine, D. A.; Bauman, K.; Chen, Y. E.; Yu, V.; Lalgudi, P.; Naziripour, A.; Veinbachs, A.; Phung, J.; Nguyen, T.; Swenson, M.; Lee, E.; Dimas, A.; Jain, S.; Meng, X.; Pham, T.; Zhao, A.; Barkal, L. J.; Gribonika, I.; Van Rompay, K. K. A.; Belkaid, Y.; Barnes, C. O.; Fischbach, M. A.

2024-01-23 microbiology
10.1101/2024.01.23.576900 bioRxiv
Show abstract

The ubiquitous skin colonist Staphylococcus epidermidis elicits a CD8+ T cell response pre-emptively, in the absence of an infection1. However, the scope and purpose of this anti-commensal immune program are not well defined, limiting our ability to harness it therapeutically. Here, we show that this colonist also induces a potent, durable, and specific antibody response that is conserved in humans and non-human primates. A series of S. epidermidis cell-wall mutants revealed that the cell surface protein Aap is a predominant target. By colonizing mice with a strain of S. epidermidis in which the parallel {beta}-helix domain of Aap is replaced by tetanus toxin fragment C, we elicit a potent neutralizing antibody response that protects mice against a lethal challenge. A similar strain of S. epidermidis expressing an Aap-SpyCatcher chimera can be conjugated with recombinant immunogens; the resulting labeled commensal elicits high titers of antibody under conditions of physiologic colonization, including a robust IgA response in the nasal mucosa. Thus, immunity to a common skin colonist involves a coordinated T and B cell response, the latter of which can be redirected against pathogens as a novel form of topical vaccination.

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