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ASCT: automatic single-cell toolbox in julia

Yang, L.; Li, N.

2023-12-28 bioinformatics
10.1101/2023.12.27.573479 bioRxiv
Show abstract

ASCT(https://github.com/kaji331/ASCT) is an automatic single-cell toolbox for analyzing single-cell RNA-Seq data. This toolbox can analyze the output data of 10X Cellranger for quality checking, preprocessing, dimensional reduction, clustering, marker genes identification and samples integration. It completely runs all functions by automatic methods without artificial intervention and can tune the parameters for advanced user. It is implemented by pure Julia language, and the overall runtime of basic steps is less than Seurat V4.

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"Similar papers" are the closest papers from that journal in the model's embedding space. They show what the match is built on, but the ranking comes mostly from a classifier over the whole training set, not from these examples alone.