Back

Nonribosomal peptide synthetases require dynamic interaction between modular domains

Zhang, C.-C.; Peng, Y.-J.; Zeng, X.; Chen, Y.; Zhou, C.-Z.; Miao, W.; Jiang, Y.-L.

2023-11-13 biochemistry
10.1101/2023.11.13.566838 bioRxiv
Show abstract

Nonribosomal peptide synthetases (NRPSs) are large multidomain enzymes for the synthesis of a variety of bioactive peptides in a modular and pipelined fashion. Here, we investigated how the condensation (C) domain and the adenylation (A) domain cooperate with each other for the efficient catalytic activity in microcystin NRPS modules. We solved two crystal structures of the microcystin NRPS modules, representing two newly identified conformations in the NRPS catalytic cycle. Our data reveals that the dynamic interaction between the C and the A domains in these modules are mediated by the conserved "RXGR" motif, and this interaction is important for the adenylation activity. Furthermore, the "RXGR" motif-mediated dynamic interaction and its functional regulation is prevalent in different NRPSs modules possessing both the A and the C domains. This study provides new insight into the catalytic mechanism of NRPSs and should inspire novel ideas in NRPS enzyme engineering in synthetic biology.

Matching journals

The top 7 journals account for 50% of the predicted probability mass.

1
eLife
5828 papers in training set
Top 4%
16.5%
2
Journal of Structural Biology
64 papers in training set
Top 0.1%
9.4%
3
Journal of Biological Chemistry
690 papers in training set
Top 1%
7.1%
4
Journal of Molecular Biology
232 papers in training set
Top 0.3%
6.1%
5
Structure
193 papers in training set
Top 0.4%
5.3%
6
Protein Science
246 papers in training set
Top 0.8%
5.0%
7
Proteins: Structure, Function, and Bioinformatics
88 papers in training set
Top 0.2%
4.7%
50% of probability mass above
8
Current Research in Structural Biology
12 papers in training set
Top 0.1%
4.2%
9
Biochemistry
148 papers in training set
Top 0.8%
3.1%
10
Communications Biology
993 papers in training set
Top 7%
3.0%
11
Acta Crystallographica Section D Structural Biology
59 papers in training set
Top 0.2%
2.3%
12
Nature Communications
5641 papers in training set
Top 43%
2.1%
13
Life Science Alliance
285 papers in training set
Top 3%
2.1%
14
International Journal of Biological Macromolecules
76 papers in training set
Top 0.8%
2.1%
15
Scientific Reports
3612 papers in training set
Top 67%
1.1%
16
Journal of Structural Biology: X
17 papers in training set
Top 0.2%
1.0%
17
The FEBS Journal
93 papers in training set
Top 2%
1.0%
18
iScience
1154 papers in training set
Top 32%
1.0%
19
Frontiers in Molecular Biosciences
102 papers in training set
Top 2%
0.9%
20
ACS Omega
105 papers in training set
Top 4%
0.8%
21
Cell Discovery
57 papers in training set
Top 1%
0.8%
22
Acta Biochimica et Biophysica Sinica
23 papers in training set
Top 0.6%
0.8%
23
mBio
833 papers in training set
Top 12%
0.6%
24
New Phytologist
346 papers in training set
Top 5%
0.6%
25
FEBS Letters
47 papers in training set
Top 1.0%
0.6%
26
Nucleic Acids Research
1281 papers in training set
Top 16%
0.6%
27
Biochemical Journal
91 papers in training set
Top 2%
0.6%