Oxidative regulation of TDP-43 self-association by a beta-to-alpha conformational switch

An evolutionarily conserved region of the TDP-43 low complexity domain twenty residues in length can adopt either an -helical or {beta}-strand conformation. When in the latter conformation, TDP-43 self-associates via the formation of a labile, cross-{beta} structure. Self-association can be monitored via the formation of phase separated protein droplets. Exposure of droplets to hydrogen peroxide leads to oxidation of conserved methionine residues distributed throughout the low complexity domain. Oxidation disassembles the cross-{beta} structure, thus eliminating both self-association and phase separation. Here we demonstrate that this process reciprocally enables formation of -helical structure in precisely the same region formerly functioning to facilitate {beta}-strand mediated self-association. We further observe that the -helical conformation allows interaction with a lipid-like detergent, and that exposure to lipids enhances the {beta}-to- conformational switch. We hypothesize that regulation of this oxidative switch will prove to be important to the control of localized translation within vertebrate cells. The experimental observations reported herein were heavily reliant on studies of 1,6-hexanediol, a chemical agent that selectively dissolves labile structures formed via the self-association of protein domains of low sequence complexity. This aliphatic alcohol is shown to exert its dissociative activity primarily via hydrogen bonding interactions with carbonyl oxygen atoms of the polypeptide backbone. Such observations underscore the central importance of backbone-mediated protein:protein interactions that facilitate the self-association and phase separation of low complexity domains. Significance StatementThe TDP-43 protein is a constituent of RNA granules involved in regulated translation. TDP-43 contains a C-terminal domain of 150 amino acids of low sequence complexity conspicuously decorated with ten methionine residues. An evolutionarily conserved region (ECR) of 20 residues within this domain can adopt either of two forms of labile secondary structure. Under normal conditions wherein methionine residues are reduced, the ECR forms a labile cross-{beta} structure that enables RNA granule condensation. Upon methionine oxidation, the ECR undergoes a conformational switch to become an -helix incompatible with self-association and granule integrity. Oxidation of the TDP-43 low complexity domain is hypothesized to occur proximal to mitochondria, thus facilitating dissolution of RNA granules and activation of localized translation.