Back

Crystallographic and thermodynamic evidence of negative cooperativity of flavin and tryptophan binding in the flavin-dependent halogenases AbeH and BorH

Ashaduzzaman, M.; Lingkon, K.; De Silva, A. J.; Bellizzi, J. J.

2023-08-22 biochemistry
10.1101/2023.08.22.554356 bioRxiv
Show abstract

The flavin-dependent halogenase AbeH produces 5-chlorotryptophan in the biosynthetic pathway of the chlorinated bisindole alkaloid BE-54017. We report that in vitro, AbeH (assisted by the flavin reductase AbeF) can chlorinate and brominate tryptophan as well as other indole derivatives and substrates with phenyl and quinoline groups. We solved the X-ray crystal structures of AbeH alone and complexed with FAD, as well as crystal structures of the tryptophan-6-halogenase BorH alone, in complex with 6-chlorotryptophan, and in complex with FAD and tryptophan. Partitioning of FAD and tryptophan into different chains of BorH and failure to incorporate tryptophan into AbeH/FAD crystals suggested that flavin and tryptophan binding are negatively coupled in both proteins. ITC and fluorescence quenching experiments confirmed the ability of both AbeH and BorH to form binary complexes with FAD or tryptophan and the inability of tryptophan to bind to AbeH/FAD or BorH/FAD complexes. FAD could not bind to BorH/tryptophan complexes, but FAD appears to displace tryptophan from AbeH/tryptophan complexes in an endothermic entropically-driven process.

Matching journals

The top 2 journals account for 50% of the predicted probability mass.

1
Nature Communications
4913 papers in training set
Top 0.2%
41.4%
2
Biochemistry
130 papers in training set
Top 0.1%
19.4%
50% of probability mass above
3
Proceedings of the National Academy of Sciences
2130 papers in training set
Top 10%
6.6%
4
Science
429 papers in training set
Top 10%
3.4%
5
Nature Chemical Biology
104 papers in training set
Top 0.9%
3.2%
6
Science Advances
1098 papers in training set
Top 12%
2.2%
7
Nature
575 papers in training set
Top 10%
1.9%
8
eLife
5422 papers in training set
Top 40%
1.8%
9
ACS Chemical Biology
150 papers in training set
Top 1%
1.4%
10
Journal of the American Chemical Society
199 papers in training set
Top 4%
1.3%
11
Structure
175 papers in training set
Top 2%
1.3%
12
Journal of Biological Chemistry
641 papers in training set
Top 3%
1.2%
13
Cell Chemical Biology
81 papers in training set
Top 3%
1.0%
14
Proteins: Structure, Function, and Bioinformatics
82 papers in training set
Top 0.8%
0.8%
15
Nature Structural & Molecular Biology
218 papers in training set
Top 4%
0.8%
16
mBio
750 papers in training set
Top 11%
0.8%
17
Cell Reports
1338 papers in training set
Top 32%
0.8%
18
ACS Catalysis
16 papers in training set
Top 0.2%
0.8%
19
ACS Central Science
66 papers in training set
Top 2%
0.7%
20
RSC Chemical Biology
32 papers in training set
Top 0.7%
0.7%
21
PLOS Biology
408 papers in training set
Top 22%
0.7%
22
Nature Chemistry
34 papers in training set
Top 1%
0.5%
23
Communications Biology
886 papers in training set
Top 31%
0.5%