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Source tracing of Leishmania donovani in emerging foci of visceral leishmaniasis in West Nepal

Monsieurs, P.; Cloots, K.; Uranw, S.; Banjara, M. R.; Ghimire, P.; Burza, S.; Hasker, E.; Dujardin, J.-C.; Domagalska, M. A.

2023-08-26 microbiology
10.1101/2023.08.22.554278 bioRxiv
Show abstract

We sequenced Leishmania donovani genomes in blood samples collected in emerging foci of Visceral Leishmaniasis, in West Nepal. We detected lineages which are very different from pre-elimination main parasite population: a new lineage and a rare one previously reported once in East Nepal. We highlight the need for genomic surveillance.

Matching journals

The top 6 journals account for 50% of the predicted probability mass.

1
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26.2%
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Top 4%
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50% of probability mass above
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Top 5%
2.7%
8
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Top 3%
2.7%
9
eLife
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Top 46%
2.1%
10
Scientific Reports
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Top 47%
2.1%
11
Nature Communications
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2.1%
12
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Top 1%
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13
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Top 0.2%
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Top 0.8%
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16
PLOS ONE
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Top 47%
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17
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○ 109 papers in training set
Top 2%
1.7%
18
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Top 8%
1.5%
19
Proceedings of the National Academy of Sciences
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Top 30%
1.5%
20
eBioMedicine
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Top 3%
1.4%
21
Infection, Genetics and Evolution
○ 42 papers in training set
Top 0.5%
1.3%
22
Malaria Journal
○ 58 papers in training set
Top 0.7%
1.1%
23
Peer Community Journal
● 281 papers in training set
Top 4%
1.0%
24
Emerging Microbes & Infections
○ 74 papers in training set
Top 1%
0.8%
25
The Lancet Infectious Diseases
○ 73 papers in training set
Top 1%
0.6%
26
Science Advances
● 1243 papers in training set
Top 34%
0.6%
27
EMBO Molecular Medicine
○ 95 papers in training set
Top 3%
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"Similar papers" are the closest papers from that journal in the model's embedding space. They show what the match is built on, but the ranking comes mostly from a classifier over the whole training set, not from these examples alone.