Back

Single Cell Transcriptomics-informed Induced Pluripotent Stem Cells Differentiation to Tenogenic Lineage

Papalamprou, A.; Yu, V.; Jiang, W.; Sheyn, J.; Stefanovic, T.; Chen, A.; Castaneda, C.; Chavez, M.; Sheyn, D.

2023-04-10 developmental biology
10.1101/2023.04.10.536240 bioRxiv
Show abstract

During vertebrate embryogenesis, axial tendons develop from the paraxial mesoderm and differentiate through specific developmental stages to reach the syndetome stage. While the main roles of signaling pathways in the earlier stages of the differentiation have been well established, pathway nuances in syndetome specification from the sclerotome stage have yet to be explored. Here, we show stepwise differentiation of human iPSCs to the syndetome stage using chemically defined media and small molecules that were modified based on single cell RNA-sequencing and pathway analysis. We identified a significant population of branching off-target cells differentiating towards a neural phenotype overexpressing Wnt. Further transcriptomics post-addition of a WNT inhibitor at the somite stage and onwards revealed not only total removal of the neural off-target cells, but also increased syndetome induction efficiency. Fine-tuning tendon differentiation in vitro is essential to address the current challenges in developing a successful cell-based tendon therapy.

Published in eLife (predicted rank #11) · training set

Matching journals

The top 4 journals account for 50% of the predicted probability mass.

1
Stem Cell Reports
130 papers in training set
Top 0.1%
22.8%
2
Stem Cells
31 papers in training set
Top 0.1%
15.4%
3
Scientific Reports
3612 papers in training set
Top 10%
6.9%
4
Stem Cell Research & Therapy
30 papers in training set
Top 0.1%
5.6%
50% of probability mass above
5
iScience
1154 papers in training set
Top 3%
4.9%
6
npj Regenerative Medicine
24 papers in training set
Top 0.1%
4.1%
7
Stem Cells Translational Medicine
13 papers in training set
Top 0.1%
4.1%
8
Development
497 papers in training set
Top 2%
3.3%
9
Frontiers in Cell and Developmental Biology
233 papers in training set
Top 0.9%
3.3%
10
Nature Communications
5641 papers in training set
Top 35%
3.2%
eLife · published here
5828 papers in training set
Top 37%
2.8%
12
Cells
249 papers in training set
Top 3%
1.8%
13
The FASEB Journal
194 papers in training set
Top 3%
1.4%
14
PLOS ONE
5266 papers in training set
Top 54%
1.1%
15
Science Advances
1243 papers in training set
Top 27%
1.1%
16
Stem Cell Research
16 papers in training set
Top 0.2%
0.9%
17
Differentiation
11 papers in training set
Top 0.2%
0.9%
18
Cell Proliferation
12 papers in training set
Top 0.2%
0.9%
19
Cell Reports
1498 papers in training set
Top 26%
0.9%
20
Journal of Biological Chemistry
690 papers in training set
Top 10%
0.6%
21
Glia
81 papers in training set
Top 2%
0.6%
22
Cell Death & Disease
126 papers in training set
Top 4%
0.6%
23
Cell Stem Cell
62 papers in training set
Top 2%
0.6%