Back

Bipalium admarginatum de Beauchamp, 1933 (Platyhelminthes, Tricladida, Geoplanidae) in Malaysia, with molecular characterisation including the mitogenome

Soo, M. O. Y.; Gastineau, R.; Verdon, G.; Winsor, L.; Justine, J.-L.

2023-02-16 zoology
10.1101/2023.02.16.528827 bioRxiv
Show abstract

We present here the first observation of Bipalium admarginatum de Beauchamp, 1933 since its original description 90 years ago. Three specimens were found on Perhentian Kecil Island, off Terengganu State, Malaysia and photographed in the field, and two were collected. This report thus includes the first colour photographs published for this species, from a locality close to the type-locality, Tioman Island (which is ca. 200 km south of the locality in this study, on the east coast of Peninsula Malaysia). We describe the external morphology and colour pattern of the species, which correspond well to the original description, itself based only on two preserved specimens. We performed an in-depth molecular characterisation of the species, including its complete mitochondrial genome, the 18S sequence and elongation 1 alpha sequence. In addition, EF1a sequences were also retrieved for 5 additional geoplanid species. No tRNA-Thr could be detected in the mitogenome of B. admarginatum, a lack already reported in several species of geoplanids, but we found a 13 bp sequence that contains the anticodon loop and seems to be conserved among geoplanids and might thus possibly represent a non-canonical undetected tRNA. We discuss the difficulties encountered in trying to reconstruct the cluster of nuclear ribosomal genes, a problem already mentioned for other Triclads. Three phylogenies, based respectively on all mitochondrial proteins, 18S, and EF1a, were computed; the position of B. admarginatum within the Bipaliinae was confirmed in each tree, as sister-group to various bipaliine species according to the sequences available for each tree.

Matching journals

The top 6 journals account for 50% of the predicted probability mass.

1
Zoological Journal of the Linnean Society
18 papers in training set
Top 0.1%
18.2%
2
PeerJ
308 papers in training set
Top 0.1%
10.8%
3
PLOS ONE
5266 papers in training set
Top 18%
10.4%
4
Molecular Phylogenetics and Evolution
69 papers in training set
Top 0.2%
5.4%
5
Zootaxa
10 papers in training set
Top 0.1%
4.8%
6
Peer Community Journal
281 papers in training set
Top 1.0%
4.8%
50% of probability mass above
7
Scientific Reports
3612 papers in training set
Top 24%
4.2%
8
Systematic Entomology
14 papers in training set
Top 0.1%
4.0%
9
The Anatomical Record
13 papers in training set
Top 0.1%
2.3%
10
Royal Society Open Science
214 papers in training set
Top 3%
1.9%
11
Infection, Genetics and Evolution
42 papers in training set
Top 0.4%
1.9%
12
Gigabyte
62 papers in training set
Top 0.6%
1.7%
13
Journal of Anatomy
29 papers in training set
Top 0.2%
1.7%
14
Biological Journal of the Linnean Society
24 papers in training set
Top 0.4%
1.5%
15
Journal of Eukaryotic Microbiology
11 papers in training set
Top 0.1%
1.5%
16
Primates
11 papers in training set
Top 0.2%
1.4%
17
eLife
5828 papers in training set
Top 58%
1.1%
18
Biology Open
156 papers in training set
Top 3%
1.0%
19
Current Microbiology
18 papers in training set
Top 0.6%
1.0%
20
Journal of Fish Biology
17 papers in training set
Top 0.4%
1.0%
21
Parasites & Vectors
60 papers in training set
Top 1%
0.8%
22
Genes
144 papers in training set
Top 4%
0.8%
23
Ecology and Evolution
267 papers in training set
Top 5%
0.8%
24
Hydrobiologia
12 papers in training set
Top 0.4%
0.8%
25
iScience
1154 papers in training set
Top 41%
0.6%
26
Frontiers in Microbiology
427 papers in training set
Top 9%
0.6%