macrosyntR : Drawing automatically ordered Oxford Grids from standard genomic files in R
El Hilali, S.; Copley, R. R.
Show abstract
Macrosynteny refers to the conservation of chromosomal to sub-chromosomal domains across species and its conservation can provide insight on the evolution of animal genomes. Pairwise comparison of de-novo assembled genomes based on predicted protein sequences often use a graphical visualization called an Oxford grid. We implemented an R package to draw Oxford grids from standard genomic file formats. The package can automatically order the chromosomes, to improve interpretability, and is thus helpful for both exploratory data analysis and production of publication quality graphics.
Matching journals
The top 1 journal accounts for 50% of the predicted probability mass.
Similar papers in this journal
Similar papers in this journal
Similar papers in this journal
- EASYstrata: An All-in-One Workflow for Genome Annotation and Genomic Divergence Analysis 97%
- MoGAAAP: A modular Snakemake workflow for automated genome assembly and annotation with quality assessment 95%
- PyOrthoANI, PyFastANI, and Pyskani: a suite of Python libraries for computation of average nucleotide identity 93%
"Similar papers" are the closest papers from that journal in the model's embedding space. They show what the match is built on, but the ranking comes mostly from a classifier over the whole training set, not from these examples alone.