Determining Best Practice for the Spatial Poisson Process in Species Distribution Modelling
Bellew, S.; Flint, I.; WANG, Y.
Show abstract
Poisson processes have become a prominent tool in species distribution modelling when analysing citizen science data based on presence records. This study examines four distinct statistical approaches, each of which utilises a different approximation to fit a Poisson point process. These include two Poisson regressions with either uniform weights or the more elaborate Berman-Turner device, as well as two logistic regressions, namely the infinitely weighted logistic regression method and Baddeleys logistic regression developed in the context of spatial Gibbs processes. This last method has not been considered in depth in the context of Poisson point processes in the previous literature. A comprehensive comparison has been conducted on the performance of these four approaches using both simulated and actual presence data sets. When the number of dummy points is sufficiently large, all approaches converge, with the Berman-Turner device demonstrating the most consistent performance. A Poisson process model was developed to accurately predict the distribution of Arctotheca calendula, an invasive weed in Australia that does not appear to have been the subject of any species niche modelling analysis in the existing literature. Our findings are valuable for ecologists and other non-statistical experts who wish to implement the best practices for predicting species distribution using Poisson point processes.
Matching journals
The top 7 journals account for 50% of the predicted probability mass.
Similar papers in this journal
- Flexible movement kernel estimation in habitat selection analyses with generalized additive models 96%
- PointedSDMs -- an R package to help facilitate the construction of integrated species distribution models 96%
- Accounting for unobserved spatial variation in step selection analyses of animal movement via spatial random effects 96%
Similar papers in this journal
Similar papers in this journal
- Modelling spatially autocorrelated detection probabilities in spatial capture-recapture using random effects 95%
- ecode: An R package to investigate community dynamics in ordinary differential equation systems 94%
- Spatially Explicit Modeling of Community Occupancy using Markov Random Field Models with Imperfect Observation: Mesocarnivores in Apostle Islands National Lakeshore 91%
Similar papers in this journal
- partR2: Partitioning R2 in generalized linear mixed models 91%
- Exploring Environmental Coverages of Species: A New Variable Selection Methodology for Rulesets from the Genetic Algorithm for Ruleset Prediction 91%
- Transects, quadrats, or points? What is the best combination to get a precise estimation of a coral community? 91%
"Similar papers" are the closest papers from that journal in the model's embedding space. They show what the match is built on, but the ranking comes mostly from a classifier over the whole training set, not from these examples alone.