Back

Accurate and Rapid Detection of Peritoneal Metastasis from Gastric Cancer by AI-assisted Stimulated Raman Cytology

Chen, X.; Wu, Z.; He, Y.; Hao, Z.; Wang, Q.; Zhou, K.; Zhou, W.; Wang, P.; Shan, F.; Li, Z.; Ji, J.; Fan, Y.; Li, Z.; Yue, S.

2023-01-06 biophysics
10.1101/2023.01.05.522829 bioRxiv
Show abstract

Peritoneal metastasis (PM) is the most common form of distant metastasis and one of the leading causes of death in gastric cancer (GC). For locally advanced GC, clinical guidelines recommend peritoneal lavage cytology for intraoperative PM detection. Unfortunately, current peritoneal lavage cytology is limited by low sensitivity (<60%). Here we established the stimulated Raman cytology (SRC), a chemical microscopy-based intelligent cytology. By taking advantages of stimulated Raman scattering in label-free, high-speed, and high-resolution chemical imaging, we firstly imaged 53951 exfoliated cells in ascites obtained from 80 GC patients (27 PM positive, 53 PM negative), at the Raman bands corresponding to DNA, protein, and lipid, respectively. Then, we revealed 12 single cell features of morphology and composition that were significantly different between PM positive and negative specimens, including cellular area, lipid protein ratio, etc. Importantly, we developed a single cell phenotyping algorithm to further transform the above raw features to feature matrix. Such matrix was crucial to identify the significant marker cell cluster, the divergence of which was finally used to differentiate the PM positive and negative. Compared with histopathology, the gold standard of PM detection, our SRC method assisted by machine learning classifiers could reach 81.5% sensitivity, 84.9% specificity, and the area under receiver operating characteristic curve of 0.85, within 20 minutes for each patient. Such remarkable improvement in detection accuracy is largely owing to incorporation of the single-cell composition features in SRC. Together, our SRC method shows great potential for accurate and rapid detection of PM from GC.

Matching journals

The top 9 journals account for 50% of the predicted probability mass.

1
Scientific Reports
3612 papers in training set
Top 6%
8.1%
2
Small Methods
29 papers in training set
Top 0.1%
8.1%
3
eLife
5828 papers in training set
Top 12%
8.1%
4
Biosensors and Bioelectronics
57 papers in training set
Top 0.1%
7.5%
5
Nature Communications
5641 papers in training set
Top 29%
5.0%
6
Communications Biology
993 papers in training set
Top 3%
4.2%
7
Analytical Chemistry
218 papers in training set
Top 0.9%
3.3%
8
Advanced Science
286 papers in training set
Top 2%
3.3%
9
Science Advances
1243 papers in training set
Top 12%
2.9%
50% of probability mass above
10
iScience
1154 papers in training set
Top 9%
2.7%
11
Biochemistry and Biophysics Reports
30 papers in training set
Top 0.2%
2.2%
12
Theranostics
37 papers in training set
Top 0.3%
2.2%
13
Laboratory Investigation
13 papers in training set
Top 0.1%
1.2%
14
Analytica Chimica Acta
17 papers in training set
Top 0.3%
1.2%
15
Cell Reports Methods
165 papers in training set
Top 2%
1.2%
16
Journal of Biophotonics
16 papers in training set
Top 0.3%
1.1%
17
npj Precision Oncology
53 papers in training set
Top 1%
1.1%
18
Lab on a Chip
96 papers in training set
Top 0.8%
1.1%
19
Biomedical Optics Express
95 papers in training set
Top 0.8%
1.1%
20
Journal of Translational Medicine
57 papers in training set
Top 2%
1.1%
21
Advanced Intelligent Systems
11 papers in training set
Top 0.2%
1.0%
22
Proceedings of the National Academy of Sciences
2444 papers in training set
Top 38%
1.0%
23
PLOS ONE
5266 papers in training set
Top 58%
1.0%
24
Genome Biology
637 papers in training set
Top 8%
0.9%
25
APL Bioengineering
19 papers in training set
Top 0.2%
0.9%
26
npj Systems Biology and Applications
125 papers in training set
Top 2%
0.9%
27
Frontiers in Molecular Biosciences
102 papers in training set
Top 2%
0.9%
28
PLOS Computational Biology
1863 papers in training set
Top 21%
0.6%
29
IEEE Transactions on Biomedical Engineering
40 papers in training set
Top 1%
0.6%
30
Optica
27 papers in training set
Top 0.3%
0.6%