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MSdb: an integrated expression atlas of human musculoskeletal system

Lin, J.; Tian, R.; Xue, Z.; Ruan, D.; Chen, P.; Xu, Y.; Dai, C.; Shen, W.; Ouyang, H.; Liu, W.

2022-11-25 bioinformatics
10.1101/2022.11.23.517756 bioRxiv
Show abstract

We introduce MSdb (https://www.msdb.org.cn), a database for visualization and integrated analysis of next-generation sequencing data from human musculoskeletal system, along with manually curated patient phenotype data. Systematic categorizing, standardized processing and freely accessible knowledge enables the reuse of public data. MSdb provides various types of analysis, including sample-level browsing of metadata information, gene/miRNA expression, and single-cell RNA-seq dataset. In addition, MSdb also allows integrated analysis for cross-samples and cross-omics analysis, including customized differentially-expressed gene/microRNA analysis, microRNA-gene network, scRNA-seq cross-sample/disease integration, and gene regulatory network analysis.

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"Similar papers" are the closest papers from that journal in the model's embedding space. They show what the match is built on, but the ranking comes mostly from a classifier over the whole training set, not from these examples alone.