Back

Cell remote mechanics regulates large-spatial Isotropic matrix modeling with dynamic simulations

Ouyang, M.; Hu, Y.; Chen, W.; Li, H.; Ji, Y.; Ji, B.; Bu, B.; Deng, L.

2022-12-18 biophysics
10.1101/2022.10.29.514382 bioRxiv
Show abstract

Tissues are often isotropic and heterogeneous organizations, which developmental processes are coordinated by cells and extracellular matrix modeling. Cells have the capability of modeling matrix in distance, however, the biophysical mechanism is largely unknown. We investigated underlying mechanism of large collagen I (COL) fibrillary modeling by cell mechanics with designed arrays of cell clusters. By incorporating dynamic contractions, Molecular Dynamics simulations yielded highly matching isotropic outcomes with observed COL clustering in experiments from variable geometrical arrays without spatial limitation. Further designed single polygons from triangles to hexagons resulted in predicted structural assembly which showed maintained spatial balance. Cell cytoskeletal integrity (actin filaments, microtubules), actomyosin contractions, and endoplasmic reticulum calcium channels were essential for remote fiber inductions, while membrane mechanosensitive integrin and Piezo showed coordinative role in regulating the fiber assembly. The study provides new insights on cell mechanics-induced isotropic matrix modeling with dynamic large-spatial scales and the associated cellular mechanism. The assembled biomechanical scaffolds with pre-designs may lead to applications in micro-tissue engineering. This work implicates heterogeneous tissue structures maybe partially derived from isotropic cell mechanics.

Matching journals

The top 8 journals account for 50% of the predicted probability mass.

1
eLife
5828 papers in training set
Top 5%
14.9%
2
Acta Biomaterialia
92 papers in training set
Top 0.2%
7.8%
3
Advanced Science
286 papers in training set
Top 0.8%
6.6%
4
Soft Matter
60 papers in training set
Top 0.2%
4.8%
5
iScience
1154 papers in training set
Top 3%
4.8%
6
Materials Today Bio
20 papers in training set
Top 0.1%
4.3%
7
Cell Reports Physical Science
19 papers in training set
Top 0.1%
4.3%
8
Cell Proliferation
12 papers in training set
Top 0.1%
3.1%
50% of probability mass above
9
Small
78 papers in training set
Top 0.5%
3.1%
10
Small Methods
29 papers in training set
Top 0.2%
2.4%
11
Frontiers in Cell and Developmental Biology
233 papers in training set
Top 2%
2.1%
12
Scientific Reports
3612 papers in training set
Top 50%
2.0%
13
Journal of Biomechanics
64 papers in training set
Top 0.5%
1.7%
14
Nature Communications
5641 papers in training set
Top 48%
1.4%
15
ACS Biomaterials Science & Engineering
37 papers in training set
Top 0.6%
1.4%
16
PNAS Nexus
159 papers in training set
Top 1%
1.3%
17
The European Physical Journal E
14 papers in training set
Top 0.1%
1.1%
18
Nano Letters
71 papers in training set
Top 1.0%
1.1%
19
Physical Chemistry Chemical Physics
36 papers in training set
Top 0.5%
1.1%
20
Cytoskeleton
27 papers in training set
Top 0.3%
1.1%
21
Biomaterials
84 papers in training set
Top 1%
1.1%
22
Science Advances
1243 papers in training set
Top 25%
1.1%
23
Advanced Biology
29 papers in training set
Top 0.6%
1.0%
24
Advanced Materials Interfaces
10 papers in training set
Top 0.2%
1.0%
25
Advanced Materials
56 papers in training set
Top 1%
0.8%
26
Biofabrication
36 papers in training set
Top 0.6%
0.8%
27
ACS Nano
113 papers in training set
Top 2%
0.8%
28
RSC Advances
22 papers in training set
Top 0.9%
0.8%
29
Communications Biology
993 papers in training set
Top 31%
0.8%
30
Biophysical Journal
631 papers in training set
Top 5%
0.6%