Back

Biological connectomes as a representation for the architecture of artificial neural networks

Schmidgall, S.; Schuman, C.; Parsa, M.

2022-10-03 neuroscience
10.1101/2022.09.30.510374 bioRxiv
Show abstract

AO_SCPLOWBSTRACTC_SCPLOWGrand efforts in neuroscience are working toward mapping the connectomes of many new species, including the near completion of the Drosophila melanogaster. It is important to ask whether these models could benefit artificial intelligence. In this work we ask two fundamental questions: (1) where and when biological connectomes can provide use in machine learning, (2) which design principles are necessary for extracting a good representation of the connectome. Toward this end, we translate the motor circuit of the C. Elegans nematode into artificial neu-ral networks at varying levels of biophysical realism and evaluate the outcome of training these networks on motor and non-motor behavioral tasks. We demonstrate that biophysical realism need not be upheld to attain the advantages of using biological circuits. We also establish that, even if the exact wiring diagram is not retained, the architectural statistics provide a valuable prior. Finally, we show that while the C. Elegans locomotion circuit provides a powerful inductive bias on locomotion problems, its structure may hinder performance on tasks unrelated to locomotion such as visual classification problems.

Matching journals

The top 8 journals account for 50% of the predicted probability mass.

1
PLOS Computational Biology
1863 papers in training set
Top 3%
12.0%
2
Biological Cybernetics
15 papers in training set
Top 0.1%
7.9%
3
Frontiers in Computational Neuroscience
60 papers in training set
Top 0.2%
6.8%
4
Neural Computation
39 papers in training set
Top 0.1%
6.8%
5
eneuro
439 papers in training set
Top 1%
5.2%
6
Frontiers in Neuroscience
256 papers in training set
Top 0.7%
4.9%
7
Journal of Neurophysiology
302 papers in training set
Top 0.9%
4.9%
8
Journal of Computational Neuroscience
29 papers in training set
Top 0.1%
4.9%
50% of probability mass above
9
Neuroinformatics
46 papers in training set
Top 0.2%
3.5%
10
Scientific Reports
3612 papers in training set
Top 33%
3.3%
11
PLOS ONE
5266 papers in training set
Top 40%
2.8%
12
Neural Networks
35 papers in training set
Top 0.2%
2.8%
13
eLife
5828 papers in training set
Top 46%
1.9%
14
iScience
1154 papers in training set
Top 21%
1.4%
15
Frontiers in Neuroinformatics
41 papers in training set
Top 0.5%
1.1%
16
Frontiers in Physiology
106 papers in training set
Top 2%
1.1%
17
Frontiers in Artificial Intelligence
20 papers in training set
Top 0.5%
1.1%
18
Frontiers in Neural Circuits
43 papers in training set
Top 0.6%
1.1%
19
Royal Society Open Science
214 papers in training set
Top 5%
1.1%
20
Journal of Neuroscience Methods
122 papers in training set
Top 2%
1.0%
21
G3 Genes|Genomes|Genetics
351 papers in training set
Top 3%
1.0%
22
Frontiers in Ecology and Evolution
69 papers in training set
Top 3%
1.0%
23
Bulletin of Mathematical Biology
92 papers in training set
Top 1%
0.8%
24
Journal of The Royal Society Interface
235 papers in training set
Top 4%
0.8%
25
European Journal of Neuroscience
189 papers in training set
Top 4%
0.6%
26
Journal of Neural Engineering
221 papers in training set
Top 2%
0.6%
27
Nature Communications
5641 papers in training set
Top 59%
0.6%
28
Bioinformatics
1204 papers in training set
Top 9%
0.6%
29
Brain Structure and Function
93 papers in training set
Top 2%
0.6%
30
Mathematical Biosciences
49 papers in training set
Top 1%
0.6%