Back

Assessment of pre-clinical liver models based on their ability to predict the liver-tropism of AAV vectors

Westhaus, A.; Cabanes-Creus, M.; Dilworth, K. L.; Zhu, E.; Salas Gomez, D.; Navarro, R. G.; Amaya, A. K.; Scott, S.; Kwiatek, M.; McCorkindale, A. L.; Hayman, T. E.; Frahm, S.; Perocheau, D. P.; Tran, B. M.; Vincan, E.; Wong, S. L.; Waters, S. A.; Wilson, L. O. W.; Baruteau, J.; Diecke, S.; Gonzalez-Aseguinolaza, G.; Santilli, G.; Thrasher, A. J.; Alexander, I. E.; Lisowski, L.

2022-09-30 bioengineering
10.1101/2022.09.28.510021 bioRxiv
Show abstract

The liver is a prime target for in vivo gene therapies using recombinant adeno-associated viral vectors (rAAV). Multiple clinical trials have been undertaken for this target in the past 15 years, however we are still to see market approval of the first liver-targeted AAV-based gene therapy. Inefficient expression of the therapeutic transgene, vector-induced liver toxicity and capsid, and/or transgene-mediated immune responses reported at high vector doses are the main challenges to date. One of the contributing factors to the insufficient clinical outcomes, despite highly encouraging preclinical data, is the lack of robust, biologically- and clinically-predictive preclinical models. To this end, this study reports findings of a functional evaluation of six AAV vectors in twelve preclinical models of the human liver, with the aim to uncover which model is the most relevant for the selection of AAV capsid variant for safe and efficient transgene delivery to primary human hepatocytes. The results, generated by studies in models ranging from immortalized cells, iPSC-derived and primary hepatocytes, and primary human hepatic organoids to in vivo models, increased our understanding of the strengths and weaknesses of each system. This should allow the development of novel gene therapies targeting the human liver.

Matching journals

The top 8 journals account for 50% of the predicted probability mass.

1
Molecular Therapy - Methods & Clinical Development
38 papers in training set
Top 0.1%
10.8%
2
Molecular Therapy Methods & Clinical Development
13 papers in training set
Top 0.1%
7.4%
3
Frontiers in Bioengineering and Biotechnology
88 papers in training set
Top 0.1%
7.1%
4
PLOS ONE
4510 papers in training set
Top 26%
6.6%
5
Molecular Pharmaceutics
16 papers in training set
Top 0.1%
6.6%
6
Molecular Therapy
71 papers in training set
Top 0.4%
5.0%
7
Computers in Biology and Medicine
120 papers in training set
Top 0.7%
3.7%
8
Cytotherapy
14 papers in training set
Top 0.1%
3.7%
50% of probability mass above
9
Scientific Reports
3102 papers in training set
Top 33%
3.7%
10
Molecular Therapy Nucleic Acids
32 papers in training set
Top 0.2%
2.4%
11
Nature Communications
4913 papers in training set
Top 46%
2.2%
12
International Journal of Molecular Sciences
453 papers in training set
Top 6%
2.0%
13
Bioengineering & Translational Medicine
21 papers in training set
Top 0.3%
2.0%
14
Journal of Controlled Release
39 papers in training set
Top 0.5%
1.8%
15
BMC Biotechnology
10 papers in training set
Top 0.1%
1.8%
16
Hepatology Communications
21 papers in training set
Top 0.2%
1.8%
17
Frontiers in Pharmacology
100 papers in training set
Top 4%
0.9%
18
Journal of Translational Medicine
46 papers in training set
Top 2%
0.9%
19
JCI Insight
241 papers in training set
Top 6%
0.8%
20
Metabolic Engineering
68 papers in training set
Top 0.6%
0.8%
21
Biomedicine & Pharmacotherapy
43 papers in training set
Top 0.9%
0.8%
22
Stem Cell Research & Therapy
30 papers in training set
Top 0.7%
0.8%
23
Biochemical and Biophysical Research Communications
78 papers in training set
Top 2%
0.8%
24
BMC Medical Genomics
36 papers in training set
Top 1%
0.8%
25
Viruses
318 papers in training set
Top 5%
0.8%
26
PLOS Pathogens
721 papers in training set
Top 8%
0.8%
27
Frontiers in Cellular and Infection Microbiology
98 papers in training set
Top 6%
0.7%
28
Frontiers in Oncology
95 papers in training set
Top 4%
0.7%
29
PeerJ
261 papers in training set
Top 17%
0.7%
30
Vaccines
196 papers in training set
Top 3%
0.5%