Back

Tackling Mitosis Domain Generalization in Histopathology Images with Color Normalization

Kondo, S.; Kasai, S.; Hirasawa, K.

2022-08-25 bioengineering
10.1101/2022.08.23.505051 bioRxiv
Show abstract

In this report, we propose a method for mitosis detection in histopathology images of MIDOG2022 challenge dataset. Our method is based on unsupervised domain adaptation at inputlevel, and a combination of color normalization and object detection. We evaluate our method by using the preliminary test set including 20 cases and obtain 0.716 F1 score.

Matching journals

The top 7 journals account for 50% of the predicted probability mass.

1
PLOS ONE
● 4510 papers in training set
Top 11%
15.2%
2
Scientific Reports
○ 3102 papers in training set
Top 3%
12.8%
3
IEEE Access
● 31 papers in training set
Top 0.1%
10.4%
4
Bioengineering
○ 24 papers in training set
Top 0.1%
4.1%
5
Computers in Biology and Medicine
○ 120 papers in training set
Top 0.7%
3.7%
6
Neurocomputing
○ 13 papers in training set
Top 0.1%
3.2%
7
Frontiers in Molecular Biosciences
○ 100 papers in training set
Top 0.7%
2.7%
50% of probability mass above
8
Journal of Pathology Informatics
○ 13 papers in training set
Top 0.1%
2.2%
9
Cancers
○ 200 papers in training set
Top 2%
2.2%
10
Frontiers in Bioinformatics
○ 45 papers in training set
Top 0.1%
2.2%
11
PLOS Computational Biology
● 1633 papers in training set
Top 14%
2.0%
12
Sensors
○ 39 papers in training set
Top 0.9%
1.8%
13
Computer Methods and Programs in Biomedicine
○ 27 papers in training set
Top 0.3%
1.8%
14
BMC Bioinformatics
○ 383 papers in training set
Top 4%
1.8%
15
Biomedical Signal Processing and Control
○ 18 papers in training set
Top 0.2%
1.8%
16
Cancer Research
● 116 papers in training set
Top 2%
1.8%
17
npj Precision Oncology
○ 48 papers in training set
Top 0.6%
1.5%
18
Neuroinformatics
○ 40 papers in training set
Top 0.6%
1.4%
19
Cells
○ 232 papers in training set
Top 4%
1.3%
20
Heliyon
○ 146 papers in training set
Top 3%
1.3%
21
Biology Open
● 130 papers in training set
Top 2%
1.1%
22
Informatics in Medicine Unlocked
○ 21 papers in training set
Top 0.8%
0.9%
23
Communications Biology
○ 886 papers in training set
Top 20%
0.8%
24
Developmental Biology
○ 134 papers in training set
Top 2%
0.8%
25
Medical Physics
○ 14 papers in training set
Top 0.6%
0.8%
26
Journal of Biophotonics
○ 16 papers in training set
Top 0.6%
0.8%
27
Bioinformatics
◐ 1061 papers in training set
Top 9%
0.8%
28
Frontiers in Physiology
○ 93 papers in training set
Top 6%
0.7%
29
Journal of Medical Imaging
● 11 papers in training set
Top 0.4%
0.7%
30
iScience
○ 1063 papers in training set
Top 36%
0.7%