Integrated single-nucleus and spatial transcriptomics captures transitional states in soybean nodule symbiosis establishment
Liu, Z.; Kong, X.; Long, Y.; Zhang, H.; Jia, J.; Qiu, L.; Zhai, J.; Yan, Z.
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Legumes form symbiosis with rhizobium leading to the development of nitrogen-fixing nodules. By integrating single-nucleus and spatial transcriptomics, we established a cell atlas of soybean nodules and roots. In central infected zone of nodule, we found that uninfected cells specialize into functionally distinct sub-groups during nodule development and revealed a transitional subtype of infected cells with enriched nodulation-related genes. Overall, our results provide a single-cell perspective for understanding rhizobium-legume symbiosis.
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