Functional succession of actively growing soil microorganisms during rewetting is shaped by precipitation history
Sieradzki, E. T.; Greenlon, A.; Nicolas, A. M.; Firestone, M. K.; Pett-Ridge, J.; Blazewicz, S. J.; Banfield, J.
Show abstract
Rewetting of seasonally dry soils induces a burst of microbial activity and carbon mineralization that changes nutrient availability and leads to succession. Yet the microbial functions that underpin this succession are not well described. Further, its unclear how previous precipitation frames microbial capacities after rewetting and how long these effects persist. We used isotopically-labeled water to rewet seasonally dry annual grassland soil that experienced either mean annual or reduced precipitation during the previous two years, and sampled at five subsequent time points. We used quantitative stable isotope probing (qSIP)-informed genome- resolved metagenomics to identify growing microorganisms, predict their capabilities, and analyze how these traits differed over time and between precipitation treatments. Organisms that grew after wetup were more abundant than non-growing organisms prior to the wet-up, suggesting that traits that initiate succession are pre-defined at the end of the prior plant growing season or via survival over the summer. Fast-growing organisms had fewer carbohydrate active enzyme (CAZy) genes per genome than slower-growing organisms, suggesting that although fast-growers were capable of degrading complex C, they may not specialize in this process. Differential abundance of CAZy genes in growing organisms throughout the succession implies that substrate availability varied with time. In contrast, the abundance of peptidases in growing organisms differed between precipitation treatments, but not over time following wet-up. Before wet-up, the soil organisms gene inventories were different between the two precipitation treatments. Surprisingly, this legacy effect waned after just one week. Thus, pre-wetup differences in microbial functional capacity converged shortly after rewetting.
Matching journals
The top 5 journals account for 50% of the predicted probability mass.
Similar papers in this journal
- Expression of macromolecular organic nitrogen degrading enzymes identifies potential mediators of soil organic N availability to an annual grass 97%
- Distinct microbial communities are linked to organic matter properties in millimetre-sized soil aggregates 96%
- Propagation of viral genomes by replicating ammonia-oxidising archaea during soil nitrification 95%
Similar papers in this journal
- Specific and conserved patterns of microbiota-structuring by maize benzoxazinoids in the field 96%
- Deterministic colonization arises early during the transition of soil bacteria to the phyllosphere and is shaped by plant-microbe interactions. 95%
- Crop management shapes the diversity and activity of DNA and RNA viruses in the rhizosphere 95%
Similar papers in this journal
- Time-series RNA metabarcoding of the active Populus tremuloides root microbiome reveals hidden temporal dynamics and dormant core members 96%
- Elevated temperature alters microbial communities, but not decomposition rates, during three years of in-situ peat decomposition 96%
- Quantitative stable-isotope probing (qSIP) with metagenomics links microbial physiology and activity to soil moisture in Mediterranean-climate grassland ecosystems 95%
Similar papers in this journal
- Unraveling the effects of spatial variability and relic DNA on the temporal dynamics of soil microbial communities 94%
- Microbial dispersal from surrounding vegetation influences phyllosphere microbiome assembly of corn and soybean 94%
- Bacterial secondary metabolite biosynthetic potential in soil varies with phylum, depth, and vegetation type 94%
"Similar papers" are the closest papers from that journal in the model's embedding space. They show what the match is built on, but the ranking comes mostly from a classifier over the whole training set, not from these examples alone.