Back

SPDEF promotes the classical subtype of pancreatic ductal adenocarcinoma.

Tonelli, C.; Yordanov, G. N.; Hao, Y.; Deschenes, A.; Klingbeil, O.; Ting, H.-C.; Brosnan, E.; Doshi, A.; Park, Y.; Vakoc, C. R.; Preall, J.; Tuveson, D.

2022-03-19 cancer biology
10.1101/2022.03.18.484951 bioRxiv
Show abstract

Pancreatic ductal adenocarcinoma (PDA) samples reveal extensive cellular heterogeneity. Using single-cell RNA sequencing, we uncover multiple tumor cell populations distinguished by their differentiation state and associated with different stages of tumor progression in a mouse model of PDA. We identify Spdef as a factor required for tumorigenesis in pancreatic cancer cells of epithelial and mucinous nature. By comparative analysis of cell differentiation states in mice and humans, we find that the Spdef program is highly expressed by human PDAs of the classical subtype. Mouse and human PDA cells expressing elevated levels of Spdef are dependent upon this transcription factor for tumor progression in vivo. The tumor-promoting function of Spdef is recapitulated by two Spdef target genes that regulate protein folding and endoplasmic reticulum activity, Agr2 and Ern2/Ire1{beta}. These findings offer insights into the factors controlling differentiation states in PDA and identify new vulnerabilities in the most common subtype of pancreatic cancer.

Matching journals

The top 5 journals account for 50% of the predicted probability mass.

1
Cancer Discovery
66 papers in training set
Top 0.1%
25.9%
2
Science Advances
1243 papers in training set
Top 1%
8.7%
3
Cancer Research
130 papers in training set
Top 0.3%
7.1%
4
Nature Communications
5641 papers in training set
Top 30%
4.7%
5
Journal of Clinical Investigation
179 papers in training set
Top 1%
4.2%
50% of probability mass above
6
eLife
5828 papers in training set
Top 28%
4.2%
7
Gastroenterology
42 papers in training set
Top 0.3%
3.9%
8
Gut
40 papers in training set
Top 0.3%
3.9%
9
Cell Reports
1498 papers in training set
Top 13%
3.2%
10
Developmental Cell
196 papers in training set
Top 1%
3.1%
11
Proceedings of the National Academy of Sciences
2444 papers in training set
Top 22%
2.4%
12
Cellular and Molecular Gastroenterology and Hepatology
46 papers in training set
Top 0.5%
2.1%
13
Cancer Cell
42 papers in training set
Top 0.7%
2.1%
14
JCI Insight
277 papers in training set
Top 4%
1.7%
15
Nature Genetics
286 papers in training set
Top 3%
1.5%
16
Clinical Cancer Research
64 papers in training set
Top 2%
1.1%
17
Nature
645 papers in training set
Top 9%
1.0%
18
Science
477 papers in training set
Top 8%
1.0%
19
Molecular Cancer
16 papers in training set
Top 0.3%
1.0%
20
Molecular Cancer Research
49 papers in training set
Top 1%
0.8%
21
Genome Medicine
183 papers in training set
Top 5%
0.8%
22
Oncogene
85 papers in training set
Top 2%
0.8%
23
Cell
431 papers in training set
Top 10%
0.8%
24
Cell Stem Cell
62 papers in training set
Top 2%
0.8%
25
EMBO Molecular Medicine
95 papers in training set
Top 4%
0.6%
26
The EMBO Journal
309 papers in training set
Top 8%
0.6%
27
Cell Death & Differentiation
48 papers in training set
Top 2%
0.6%
28
Nature Cancer
39 papers in training set
Top 2%
0.6%
29
Science Translational Medicine
127 papers in training set
Top 5%
0.6%