Back

Structure of EPCR in a non-canonical conformation

Lopez-Sagaseta, J.; Erausquin Arrondo, E.; Rodriguez Fernandez, A.

2021-12-17 biochemistry
10.1101/2021.12.16.472967 bioRxiv
Show abstract

Structural motion and conformational flexibility are often linked to biological functions of proteins. Whether the endothelial protein C receptor (EPCR), like other molecules, is vulnerable to folding transitions or might adopt alternative conformations remains unknown. The current understanding points to a rigid molecular structure suitable for binding of its ligands, like the anticoagulant protein C, or the CIDR1 domains of Plasmodium falciparum. In this study, we have identified a novel conformation of EPCR, captured by X-ray diffraction analyses, whereby Tyr154 shows a dramatically altered structural arrangement, likely incompatible with protein C binding. Biolayer interferometry analysis confirms previous results supporting a critical role for this position in protein C binding. Importantly, the conformational change has no apparent effect in the bound lipid. We conclude these findings reveal a site of conformational vulnerability in EPCR and inform a highly malleable region that could modulate EPCR functions.

Matching journals

The top 8 journals account for 50% of the predicted probability mass.

1
Scientific Reports
3102 papers in training set
Top 2%
14.3%
2
Journal of Biological Chemistry
641 papers in training set
Top 0.2%
6.3%
3
Structure
175 papers in training set
Top 0.4%
6.3%
4
Journal of Molecular Biology
217 papers in training set
Top 0.2%
6.3%
5
The FEBS Journal
78 papers in training set
Top 0.1%
4.8%
6
International Journal of Molecular Sciences
453 papers in training set
Top 1%
4.8%
7
PLOS ONE
4510 papers in training set
Top 36%
3.9%
8
Biochemical Journal
80 papers in training set
Top 0.1%
3.6%
50% of probability mass above
9
Open Biology
95 papers in training set
Top 0.2%
3.6%
10
Journal of Chemical Information and Modeling
207 papers in training set
Top 2%
2.4%
11
PLOS Computational Biology
1633 papers in training set
Top 14%
2.1%
12
Journal of Biomolecular Structure and Dynamics
43 papers in training set
Top 0.5%
2.1%
13
Life Science Alliance
263 papers in training set
Top 0.2%
1.9%
14
Biomolecules
95 papers in training set
Top 0.4%
1.8%
15
Biophysical Journal
545 papers in training set
Top 3%
1.7%
16
Computational and Structural Biotechnology Journal
216 papers in training set
Top 4%
1.7%
17
International Journal of Biological Macromolecules
65 papers in training set
Top 2%
1.5%
18
eLife
5422 papers in training set
Top 47%
1.3%
19
Communications Biology
886 papers in training set
Top 13%
1.3%
20
Protein Science
221 papers in training set
Top 1%
1.3%
21
Proteins: Structure, Function, and Bioinformatics
82 papers in training set
Top 0.7%
1.2%
22
Nature Communications
4913 papers in training set
Top 56%
1.2%
23
Journal of Molecular Graphics and Modelling
16 papers in training set
Top 0.1%
1.2%
24
ACS Omega
90 papers in training set
Top 3%
1.2%
25
Frontiers in Molecular Biosciences
100 papers in training set
Top 3%
1.2%
26
Cellular and Molecular Life Sciences
84 papers in training set
Top 0.4%
0.9%
27
Frontiers in Cell and Developmental Biology
218 papers in training set
Top 7%
0.9%
28
Viruses
318 papers in training set
Top 5%
0.8%
29
Proceedings of the National Academy of Sciences
2130 papers in training set
Top 44%
0.7%
30
Biochemical and Biophysical Research Communications
78 papers in training set
Top 2%
0.7%