Back

Invertebrate DNA methylation and gene regulation

Dixon, G.; Matz, M. V.

2021-11-19 genomics
10.1101/2021.11.19.469267 bioRxiv
Show abstract

As human activity alters the planet, there is a pressing need to understand how organisms adapt to environmental change. Of growing interest in this area is the role of epigenetic modifications, such as DNA methylation, in tailoring gene expression to fit novel conditions. Here, we reanalyzed nine invertebrate (Anthozoa and Hexapoda) datasets to validate a key prediction of this hypothesis: changes in DNA methylation in response to some condition correlate with changes in gene expression. While we detected both differential methylation and differential expression, there was no simple relationship between these differences. Hence, if changes in DNA methylation regulate invertebrate transcription, the mechanism does not follow a simple linear relationship.

Matching journals

The top 7 journals account for 50% of the predicted probability mass.

1
Nature Communications
4913 papers in training set
Top 9%
14.8%
2
BMC Biology
248 papers in training set
Top 0.1%
12.8%
3
eLife
5422 papers in training set
Top 5%
10.5%
4
Molecular Biology and Evolution
488 papers in training set
Top 0.9%
4.9%
5
Nucleic Acids Research
1128 papers in training set
Top 6%
3.6%
6
Genome Biology
555 papers in training set
Top 3%
3.1%
7
PLOS Genetics
756 papers in training set
Top 6%
2.8%
50% of probability mass above
8
Scientific Reports
3102 papers in training set
Top 44%
2.8%
9
Genome Biology and Evolution
280 papers in training set
Top 0.6%
2.8%
10
Epigenetics
43 papers in training set
Top 0.3%
2.4%
11
PLOS Biology
408 papers in training set
Top 7%
2.1%
12
Nature Ecology & Evolution
113 papers in training set
Top 2%
2.1%
13
GENETICS
189 papers in training set
Top 0.5%
1.9%
14
Genome Research
409 papers in training set
Top 2%
1.9%
15
Genetics
225 papers in training set
Top 2%
1.9%
16
Science Advances
1098 papers in training set
Top 16%
1.8%
17
Molecular Ecology
304 papers in training set
Top 3%
1.7%
18
Philosophical Transactions of the Royal Society B
51 papers in training set
Top 3%
1.7%
19
Cell Reports
1338 papers in training set
Top 24%
1.7%
20
BMC Genomics
328 papers in training set
Top 2%
1.7%
21
iScience
1063 papers in training set
Top 19%
1.3%
22
PLOS ONE
4510 papers in training set
Top 58%
1.3%
23
Frontiers in Genetics
197 papers in training set
Top 6%
1.3%
24
Proceedings of the National Academy of Sciences
2130 papers in training set
Top 37%
1.2%
25
Current Biology
596 papers in training set
Top 11%
1.2%
26
Cell Systems
167 papers in training set
Top 10%
1.0%
27
Cell
370 papers in training set
Top 16%
0.8%
28
Journal of Molecular Evolution
21 papers in training set
Top 0.3%
0.8%
29
Open Biology
95 papers in training set
Top 3%
0.5%
30
G3
33 papers in training set
Top 0.7%
0.5%