Back

Complexity-stability relationship in empirical microbial ecosystems

Yonatan, Y.; Amit, G.; Bashan, A.; Friedman, Y.

2021-07-30 ecology
10.1101/2021.07.29.454345 bioRxiv
Show abstract

Mays stability theory [1, 2], which holds that large ecosystems can be stable up to a critical level of complexity, a product of the number of resident species and the intensity of their interactions, has been a central paradigm in theoretical ecology [3-7]. So far, however, empirically demonstrating this theory in real ecological systems has been a long-standing challenge, with inconsistent results [8]. Especially, it is unknown whether this theory is pertinent in the rich and complex communities of natural microbiomes, mainly due to the challenge of reliably reconstructing such large ecological interaction networks [9-11]. Here, we introduce a novel computational framework for estimating an ecosystems complexity without relying on a priori knowledge of its underlying interaction network. By applying this method to human-associated microbial communities from different body sites [12] and sponge-associated microbial communities from different geographical locations [13], we found that in both cases the communities display a pronounced trade-off between the number of species and their effective connectance. These results suggest that natural microbiomes are shaped by stability constraints, which limit their complexity.

Matching journals

The top 5 journals account for 50% of the predicted probability mass.

1
ISME Communications
103 papers in training set
Top 0.1%
18.6%
2
PLOS Computational Biology
1633 papers in training set
Top 1%
18.6%
3
Proceedings of the National Academy of Sciences
2130 papers in training set
Top 11%
6.4%
4
The ISME Journal
194 papers in training set
Top 0.4%
4.9%
5
Scientific Reports
3102 papers in training set
Top 37%
3.6%
50% of probability mass above
6
Nature Communications
4913 papers in training set
Top 39%
3.6%
7
Ecology Letters
121 papers in training set
Top 0.5%
3.3%
8
Proceedings of the Royal Society B: Biological Sciences
341 papers in training set
Top 2%
3.1%
9
mSystems
361 papers in training set
Top 3%
3.1%
10
Communications Biology
886 papers in training set
Top 4%
2.6%
11
Ecology
70 papers in training set
Top 0.3%
2.1%
12
Journal of The Royal Society Interface
189 papers in training set
Top 2%
2.1%
13
eLife
5422 papers in training set
Top 40%
1.8%
14
PRX Life
34 papers in training set
Top 0.3%
1.7%
15
iScience
1063 papers in training set
Top 18%
1.5%
16
Nature Ecology & Evolution
113 papers in training set
Top 3%
1.3%
17
Physical Review Research
46 papers in training set
Top 0.5%
1.3%
18
Biology Letters
66 papers in training set
Top 0.5%
1.1%
19
PLOS Biology
408 papers in training set
Top 15%
1.0%
20
Microbiome
139 papers in training set
Top 2%
1.0%
21
Frontiers in Microbiology
375 papers in training set
Top 8%
0.9%
22
PLOS ONE
4510 papers in training set
Top 66%
0.8%
23
Frontiers in Genetics
197 papers in training set
Top 9%
0.8%
24
Physical Review E
95 papers in training set
Top 1%
0.8%
25
Genomics, Proteomics & Bioinformatics
171 papers in training set
Top 6%
0.7%
26
Computational and Structural Biotechnology Journal
216 papers in training set
Top 9%
0.7%
27
Journal of Theoretical Biology
144 papers in training set
Top 2%
0.7%
28
Briefings in Bioinformatics
326 papers in training set
Top 7%
0.6%
29
Physical Review X
23 papers in training set
Top 0.7%
0.6%
30
Patterns
70 papers in training set
Top 3%
0.6%