Sequencing SARS-CoV-2 in Slovakia: An Unofficial Genomic Surveillance Report
Brejova, B.; Hodorova, V.; Borsova, K.; Cabanova, V.; Szemes, T.; Misik, M.; Klempa, B.; Nosek, J.; Vinar, T.
Show abstract
We present an unofficial SARS-CoV-2 genomic surveillance report from Slovakia based on approximately 3500 samples sequenced between March 2020 and May 2021. Early samples show multiple independent imports of SARS-CoV-2 from other countries. In Fall 2020, three virus variants (B.1.160, B.1.1.170, B.1.258) dominated as the number of cases increased. In November 2020, B.1.1.7 (alpha) variant was introduced in Slovakia and quickly became the most prevalent variant in the country (> 75% of new cases by early February 2021 and > 95% in mid-March).
Matching journals
The top 5 journals account for 50% of the predicted probability mass.
Similar papers in this journal
- An advanced sequence clustering and designation workflow reveals the enzootic maintenance of a dominant West Nile virus subclade in Germany 96%
- Recurrent SARS-CoV-2 Mutations in Immunodeficient Patients 95%
- Emergence and spread of a sub-lineage of SARS-CoV-2 Alpha variant B.1.1.7 in Europe, and with further evolution of spike mutation accumulations shared with the Beta and Gamma variants 95%
Similar papers in this journal
- Phylogenomics and population genomics of SARS-CoV-2 in Mexico reveals variants of interest (VOI) and a mutation in the Nucleocapsid protein associated with symptomatic versus asymptomatic carriers 96%
- Development of a nextflow bioinformatics pipeline for the detection of SARS-CoV-2 co-infection cases from genomic surveillance in the Philippines 95%
- SARS-CoV-2 variants of concern dominate in Lahore, Pakistan in April 2021 95%
Similar papers in this journal
- Independent acquisition of short insertions at the RIR1 site in the spike N-terminal domain of the SARS-CoV-2 BA.2 lineage 95%
- Re-emergence of BTV serotype 4 in North Macedonia, July 2020 93%
- Comprehensive annotations of the mutational spectra of SARS-CoV-2 spike protein: a fast and accurate pipeline 93%
Similar papers in this journal
- SARS-CoV-2 within-host and in-vitro genomic variability and sub-genomic RNA levels indicate differences in viral expression between clinical and in-vitro cohorts. 95%
- Genomic Surveillance of SARS-CoV-2 Using Long-Range PCR Primers 94%
- Viruses previously identified in Brazil as belonging to HIV-1 circulating recombinant form (CRF) 72_BF1 represent two closely related CRFs, one of which, designated CRF122_BF1, is also circulating in Spain. 93%
Similar papers in this journal
- Five-year (2017-2022) evolutionary dynamics of human coronavirus OC43 in southern France based on whole genome next-generation sequencing 95%
- Sequencing of Monkeypox virus from infected patients reveals viral genomes with APOBEC3-like editing, gene inactivation, and bacterial agents of skin superinfection 95%
- Nanopore adaptive sampling of a metagenomic sample derived from a human monkeypox case 95%
"Similar papers" are the closest papers from that journal in the model's embedding space. They show what the match is built on, but the ranking comes mostly from a classifier over the whole training set, not from these examples alone.