Back

A geospatial mapping pipeline for ecologists

van den Hoogen, J.; Robmann, N.; Routh, D.; Lauber, T.; van Tiel, N.; Danylo, O.; Crowther, T. W.

2021-07-09 ecology
10.1101/2021.07.07.451145 bioRxiv
Show abstract

Geospatial modelling can give fundamental insights in the biogeography of life, providing key information about the living world in current and future climate scenarios. Emerging statistical and machine learning approaches can help us to generate new levels of predictive accuracy in exploring the spatial patterns in ecological and biophysical processes. Although these statistical models cannot necessarily represent the essential mechanistic insights that are needed to understand global biogeochemical processes under ever-changing environmental conditions, they can provide unparalleled predictive insights that can be useful for exploring the variation in biophysical processes across space. As such, these emerging tools can be a valuable approach to complement existing mechanistic approaches as we aim to understand the biogeography of Earths ecosystems. Here, we present a comprehensive methodology that efficiently handles large datasets to produce global predictions. This mapping pipeline can be used to generate quantitative, spatially explicit predictions, with a particular emphasis on spatially-explicit insights into the evaluation of model uncertainties and inaccuracies.

Matching journals

The top 4 journals account for 50% of the predicted probability mass.

1
Ecography
50 papers in training set
Top 0.1%
26.1%
2
Methods in Ecology and Evolution
160 papers in training set
Top 0.3%
14.8%
3
PLOS Computational Biology
1633 papers in training set
Top 6%
6.4%
4
Global Ecology and Biogeography
41 papers in training set
Top 0.1%
4.3%
50% of probability mass above
5
Nature Communications
4913 papers in training set
Top 39%
3.6%
6
PLOS ONE
4510 papers in training set
Top 39%
3.6%
7
eLife
5422 papers in training set
Top 32%
2.6%
8
Environmental Research Letters
15 papers in training set
Top 0.2%
2.5%
9
Proceedings of the National Academy of Sciences
2130 papers in training set
Top 26%
2.4%
10
Scientific Reports
3102 papers in training set
Top 50%
2.1%
11
Ecological Modelling
24 papers in training set
Top 0.3%
1.8%
12
Ecology Letters
121 papers in training set
Top 0.7%
1.7%
13
Ecology and Evolution
232 papers in training set
Top 2%
1.7%
14
iScience
1063 papers in training set
Top 14%
1.7%
15
New Phytologist
309 papers in training set
Top 3%
1.7%
16
Communications Earth & Environment
14 papers in training set
Top 0.5%
1.3%
17
Ecological Informatics
29 papers in training set
Top 0.5%
1.3%
18
Ecological Applications
28 papers in training set
Top 0.4%
1.3%
19
Global Change Biology
69 papers in training set
Top 1%
1.3%
20
PLOS Biology
408 papers in training set
Top 16%
0.9%
21
Patterns
70 papers in training set
Top 2%
0.9%
22
Journal of Biogeography
37 papers in training set
Top 0.3%
0.8%
23
Ecology
70 papers in training set
Top 0.8%
0.8%
24
Ecological Indicators
20 papers in training set
Top 0.6%
0.8%
25
Peer Community Journal
254 papers in training set
Top 4%
0.8%
26
Science of The Total Environment
179 papers in training set
Top 5%
0.8%
27
Nature Ecology & Evolution
113 papers in training set
Top 4%
0.8%
28
Royal Society Open Science
193 papers in training set
Top 5%
0.7%
29
Journal of Thermal Biology
15 papers in training set
Top 0.3%
0.6%
30
Landscape Ecology
12 papers in training set
Top 0.5%
0.6%