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A short report on optimization of nucleic acid probes by DNA microarray synthesis and next generation sequencing

Nong Mikkelsen, R. Y.; Mikkelsen, T. S.

2021-06-04 synthetic biology
10.1101/2021.05.04.442640 bioRxiv
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This manuscript has been withdrawn by bioRxiv as it was submitted and made public without the full consent of all the authors. Therefore, the authors do not wish this work to be cited as reference for the project. If you have any questions, please contact the corresponding author

Matching journals

The top 7 journals account for 50% of the predicted probability mass.

1
ACS Synthetic Biology
● 287 papers in training set
Top 0.3%
12.9%
Similar papers in this journal
2
Nucleic Acids Research
◐ 1281 papers in training set
Top 1%
12.1%
Similar papers in this journal
3
Briefings in Bioinformatics
◐ 354 papers in training set
Top 1%
6.8%
Similar papers in this journal
4
Synthetic Biology
◐ 24 papers in training set
Top 0.1%
6.8%
Similar papers in this journal
5
Scientific Reports
○ 3612 papers in training set
Top 21%
4.4%
Similar papers in this journal
6
PLOS ONE
● 5266 papers in training set
Top 32%
4.1%
7
Computational and Structural Biotechnology Journal
● 242 papers in training set
Top 1.0%
4.1%
50% of probability mass above
8
Nature Communications
○ 5641 papers in training set
Top 34%
3.3%
9
Frontiers in Bioengineering and Biotechnology
○ 98 papers in training set
Top 0.5%
3.3%
10
International Journal of Molecular Sciences
○ 494 papers in training set
Top 4%
3.2%
11
Trends in Biotechnology
○ 12 papers in training set
Top 0.1%
2.8%
12
PeerJ
◐ 308 papers in training set
Top 3%
2.7%
13
Genes
○ 144 papers in training set
Top 1%
2.4%
14
Nature Protocols
○ 33 papers in training set
Top 0.2%
1.9%
15
Synthetic and Systems Biotechnology
○ 11 papers in training set
Top 0.1%
1.5%
16
Analytical Chemistry
● 218 papers in training set
Top 2%
1.5%
17
Life
○ 29 papers in training set
Top 0.3%
1.5%
18
eLife
● 5828 papers in training set
Top 58%
1.1%
19
ACS Omega
● 105 papers in training set
Top 3%
1.1%
20
Biosensors and Bioelectronics
○ 57 papers in training set
Top 0.6%
1.1%
21
Frontiers in Pharmacology
○ 111 papers in training set
Top 2%
1.1%
22
BMC Biology
○ 265 papers in training set
Top 4%
1.0%
23
Frontiers in Microbiology
○ 427 papers in training set
Top 7%
0.9%
24
Epigenetics
○ 50 papers in training set
Top 0.6%
0.9%
25
Life Science Alliance
● 285 papers in training set
Top 7%
0.9%
26
Bioinformatics
◐ 1204 papers in training set
Top 9%
0.6%
27
Journal of Molecular Biology
○ 232 papers in training set
Top 4%
0.6%
28
Journal of Translational Medicine
○ 57 papers in training set
Top 3%
0.6%

"Similar papers" are the closest papers from that journal in the model's embedding space. They show what the match is built on, but the ranking comes mostly from a classifier over the whole training set, not from these examples alone.