Back

Estimating SARS-CoV-2 variant strain infectiousness in Japan as of March 28, 2021

Kurita, J.; Sugawara, T.; Ohkusa, Y. O.

2021-04-17 public and global health
10.1101/2021.04.11.21255283 medRxiv
Show abstract

BackgroundA variant strain of SARS-CoV-2, VOC202012/01, emerged in the UK in September, 2020. Its infectiousness was estimated as higher than that of the original strain. ObjectWe estimated the infectiousness of the variant strain of SARS-CoV-2 in comparison to that of the original strain under conditions prevailing in Japan. MethodsWe estimated infectiousness through a simple susceptible-infected-recovered (SIR) model by strain. The study period was March 1-28, 2020. The information used for the study was available as of April 3, 2020. ResultsThe estimated reproduction number of the SARS-CoV-2 variant strain was 1.799; its 95% CI was [1.642, 1.938]. The onset date of the first case in Japan was estimated as December 4 ([November 16, December 14]), 2020. However, infectiousness of the original strain was estimated as 1.123 ([1.093, 1.166]). Discussion and ConclusionWe demonstrated that infectiousness increased by 0.684 or 60%, increasing from the original to the variant. That finding might be comparable to that of a study conducted in the UK. However, the difference must be monitored continuously and carefully.

Matching journals

The top 10 journals account for 50% of the predicted probability mass.

1
Public Health
34 papers in training set
Top 0.1%
10.5%
2
PLOS ONE
4510 papers in training set
Top 23%
8.3%
3
Frontiers in Public Health
140 papers in training set
Top 1%
4.9%
4
Frontiers in Medicine
113 papers in training set
Top 0.8%
4.9%
5
Travel Medicine and Infectious Disease
15 papers in training set
Top 0.1%
4.0%
6
International Journal of Infectious Diseases
126 papers in training set
Top 0.4%
4.0%
7
PeerJ
261 papers in training set
Top 2%
3.6%
8
JMIR Public Health and Surveillance
45 papers in training set
Top 0.6%
3.6%
9
Epidemiology and Infection
84 papers in training set
Top 0.5%
3.6%
10
BMC Infectious Diseases
118 papers in training set
Top 1%
3.6%
50% of probability mass above
11
BMC Public Health
147 papers in training set
Top 2%
3.1%
12
Scientific Reports
3102 papers in training set
Top 45%
2.6%
13
Journal of Infection and Public Health
15 papers in training set
Top 0.1%
2.4%
14
The American Journal of Tropical Medicine and Hygiene
60 papers in training set
Top 2%
2.1%
15
International Journal of Environmental Research and Public Health
124 papers in training set
Top 3%
1.9%
16
Clinical Infectious Diseases
231 papers in training set
Top 3%
1.7%
17
Emerging Infectious Diseases
103 papers in training set
Top 1%
1.7%
18
Virology Journal
25 papers in training set
Top 0.1%
1.5%
19
BMJ Open
554 papers in training set
Top 10%
1.5%
20
Journal of Medical Virology
137 papers in training set
Top 3%
1.2%
21
Journal of Infection
71 papers in training set
Top 2%
1.1%
22
Science of The Total Environment
179 papers in training set
Top 4%
1.0%
23
Transboundary and Emerging Diseases
34 papers in training set
Top 0.6%
1.0%
24
Eurosurveillance
80 papers in training set
Top 1%
0.9%
25
Disaster Medicine and Public Health Preparedness
16 papers in training set
Top 1%
0.9%
26
Cureus
67 papers in training set
Top 4%
0.9%
27
Vaccines
196 papers in training set
Top 2%
0.9%
28
Infectious Diseases of Poverty
10 papers in training set
Top 0.3%
0.9%
29
Biology
43 papers in training set
Top 2%
0.8%
30
Allergy
23 papers in training set
Top 0.6%
0.8%