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SARS-CoV-2 genome surveillance in Mainz, Germany, reveals convergent origin of the N501Y spike mutation in a hospital setting

NA Lemmermann; B Lieb; T Laufs; A Renzaho; S Runkel; W Kohnen; M Linke; S Gerber; S Schweiger; A Michel; S-E Bikar; B Plachter; T Hankeln

2021-02-12 infectious diseases
10.1101/2021.02.11.21251324 medRxiv
Show abstract

While establishing a regional SARS-Cov-2 variant surveillance by genome sequencing, we have identified three infected individuals in a clinical setting (two long-term hospitalized patients and a nurse) that shared the spike N501Y mutation within a genotype background distinct from the current viral variants of concern. We suggest that the adaptive N501Y mutation, known to increase SARS-CoV-2 transmissibility, arose by convergent evolution around December in Mainz, Germany. Hospitalized patients with a compromised immune system may be a potential source of novel viral variants, which calls for monitoring viral evolution by genome sequencing in clinical settings.

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