Cutevariant: a GUI-based desktop application to explore genetics variations
Schutz, S.; Montier, T.; Genin, E.
Show abstract
Cutevariant is a user-friendly GUI based desktop application for genomic research designed to search for variations in DNA samples collected in annotated files and encoded in the Variant Calling Format. The application imports data into a local relational database wherefrom complex filter-queries can be built either from the intuitive GUI or using a Domain Specific Language (DSL). Cutevariant provides more features than any existing applications without compromising on performance. The plugin based architecture provides highly customizable features. Cutevariant is distributed as a multiplatform client-side software under an open source licence and is available at https://github.com/labsquare/Cutevariant. It has been designed from the beginning to be easily adopted by IT-agnostic end-users.
Matching journals
The top 4 journals account for 50% of the predicted probability mass.
Similar papers in this journal
- ATAV: a comprehensive platform for population-scale genomic analyses 96%
- Variant Graph Craft (VGC): A Comprehensive Tool for Analyzing Genetic Variation and Identifying Disease-Causing Variants. 96%
- ILIAD: A suite of automated Snakemake workflows for processing genomic data for downstream applications 96%
Similar papers in this journal
Similar papers in this journal
- DivBrowse - interactive visualization and exploratory data analysis of variant call matrices 98%
- Machado: open source genomics data integration framework 97%
- SnpHub: an easy-to-set-up web server framework for exploring large-scale genomic variation data in the post-genomic era with applications in wheat 96%
Similar papers in this journal
"Similar papers" are the closest papers from that journal in the model's embedding space. They show what the match is built on, but the ranking comes mostly from a classifier over the whole training set, not from these examples alone.