Back

The evolution of the metazoan Toll receptor family and its expression during protostome development

Orus, A.; Lu, T.-M.; Hejnol, A.

2021-02-02 evolutionary biology
10.1101/2021.02.01.429095 bioRxiv
Show abstract

BackgroundToll-like receptors (TLRs) play a crucial role in immunity and development. They contain leucine-rich repeat domains, one transmembrane domain, and one Toll/IL-1 receptor domain. TLRs have been classified into V-type/scc and P-type/mcc TLRs, based on differences in the leucine-rich repeat domain region. Although TLRs are widespread in animals, detailed phylogenetic studies of this gene family are lacking. Here we aim to uncover TLR evolution by conducting a survey and a phylogenetic analysis in species across Bilateria. To discriminate between their role in development and immunity we furthermore analyzed stage-specific transcriptomes of the ecdysozoans Priapulus caudatus and Hypsibius exemplaris, and the spiralians Crassostrea gigas and Terebratalia transversa. ResultsWe detected a low number of TLRs in ecdysozoan species, and multiple independent radiations within the Spiralia. V-type/scc and P-type/mcc type-receptors are present in cnidarians, protostomes and deuterostomes, and therefore they emerged early in TLR evolution, followed by a loss in xenacoelomorphs. Our phylogenetic analysis shows that TLRs cluster into three major clades: clade is present in cnidarians, ecdysozoans, and spiralians; clade {beta} in deuterostomes, ecdysozoans, and spiralians; and clade {gamma} is only found in spiralians. Our stage-specific transcriptome and in situ hybridization analyses show that TLRs are expressed during development in all species analyzed, which indicates a broad role of TLRs during animal development. ConclusionsOur findings suggest that the bilaterian TLRs likely emerged by duplication from a single TLR encoding gene (proto-TLR) present in the last common cnidarian-bilaterian ancestor. This proto-TLR gene duplicated before the split of protostomes and deuterostomes; a second duplication occurred in the lineage to the Trochozoa. While all three clades further radiated in several spiralian lineages, specific TLRs clades have been presumably lost in others. Furthermore, the expression of the majority of these genes during protostome ontogeny suggests their involvement in immunity and development.

Matching journals

The top 5 journals account for 50% of the predicted probability mass.

1
BMC Biology
265 papers in training set
Top 0.1%
23.0%
2
PLOS ONE
5266 papers in training set
Top 18%
10.1%
3
BMC Genomics
406 papers in training set
Top 0.4%
8.1%
4
Royal Society Open Science
214 papers in training set
Top 0.3%
6.9%
5
EvoDevo
16 papers in training set
Top 0.1%
4.4%
50% of probability mass above
6
Scientific Reports
3612 papers in training set
Top 31%
3.3%
7
PLOS Biology
486 papers in training set
Top 2%
3.3%
8
eLife
5828 papers in training set
Top 38%
2.7%
9
PLOS Pathogens
820 papers in training set
Top 5%
2.5%
10
BMC Ecology and Evolution
51 papers in training set
Top 0.4%
2.2%
11
PLOS Neglected Tropical Diseases
466 papers in training set
Top 3%
2.2%
12
Viruses
332 papers in training set
Top 3%
1.8%
13
International Journal of Molecular Sciences
494 papers in training set
Top 7%
1.8%
14
Philosophical Transactions of the Royal Society B: Biological Sciences
72 papers in training set
Top 0.8%
1.5%
15
Proceedings of the Royal Society B: Biological Sciences
393 papers in training set
Top 4%
1.5%
16
PLOS Genetics
862 papers in training set
Top 9%
1.2%
17
Molecular Biology and Evolution
542 papers in training set
Top 4%
1.2%
18
Genome Biology and Evolution
338 papers in training set
Top 2%
1.2%
19
Frontiers in Cell and Developmental Biology
233 papers in training set
Top 3%
1.2%
20
GigaScience
212 papers in training set
Top 4%
1.0%
21
iScience
1154 papers in training set
Top 33%
0.9%
22
Genes
144 papers in training set
Top 4%
0.9%
23
Cells
249 papers in training set
Top 8%
0.6%
24
Open Biology
106 papers in training set
Top 2%
0.6%
25
Journal of Biomedical Science
17 papers in training set
Top 0.4%
0.6%
26
Communications Biology
993 papers in training set
Top 33%
0.6%
27
Peer Community Journal
281 papers in training set
Top 5%
0.6%