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Personalized Virus Load Curves of SARS-CoV-2 Infection
Hillen, T.; Contreras, C.; Newby, J.
2021-01-21
physiology
10.1101/2021.01.21.427676
bioRxiv
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This manuscript has been withdrawn due to submission errors. Therefore, the authors do not wish this work to be cited as a reference. Please see and cite for reference the manuscript posted on medRxiv https://doi.org/10.1101/2021.01.21.21250268 If you have any questions, please contact the corresponding author.
Matching journals
●Non-profit
◐University press
○Commercial
The top 3 journals account for 50% of the predicted probability mass.
1
Nature Communications
○
5641 papers in training set
Top 6%
22.7%
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- Influenza A virus undergoes compartmentalized replication in vivo dominated by stochastic bottlenecks 92%
- A conserved long-range RNA interaction in SARS-CoV-2 recruits ADAR1 to enhance virus proliferation 92%
- Shotgun Transcriptome and Isothermal Profiling of SARS-CoV-2 Infection Reveals Unique Host Responses, Viral Diversification, and Drug Interactions 92%
2
eLife
●
5828 papers in training set
Top 2%
22.7%
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- High-throughput neutralization measurements correlate strongly with evolutionary success of human influenza strains 92%
- Phylodynamics of SARS-CoV-2 transmissions in France, Europe and the world during 2020 92%
- Principles of dengue virus evolvability derived from genotype-fitness maps in human and mosquito cells 92%
3
Molecular Systems Biology
○
162 papers in training set
Top 0.1%
8.0%
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- High diversity in Delta variant across countries revealed via genome-wide analysis of SARS-CoV-2 beyond the Spike protein 90%
- Genome-scale metabolic modeling reveals SARS-CoV-2-induced metabolic changes and antiviral targets 90%
- Dengue virus preferentially uses human and mosquito non-optimal codons 89%
50% of probability mass above
4
Nature
○
645 papers in training set
Top 2%
6.8%
Similar papers in this journal
- Identification of a molnupiravir-associated mutational signature in SARS-CoV-2 sequencing databases 93%
- High number of SARS-CoV-2 persistent infections uncovered through genetic analysis of samples from a large community-based surveillance study 92%
- Spike mutation D614G alters SARS-CoV-2 fitness and neutralization susceptibility 92%
"Similar papers" are the closest papers from that journal in the model's embedding space. They show what the match is built on, but the ranking comes mostly from a classifier over the whole training set, not from these examples alone.