Back

Translatomic profiling of the acute stress response: It's a TRAP

von Ziegler, L.; Bohacek, J.; Germain, P.-L.

2020-11-25 neuroscience
10.1101/2020.11.24.392464 bioRxiv
Show abstract

The impact of stress on gene expression in different cell types of the brain remains poorly characterized. Three pioneering studies have recently used translating ribosome affinity purification followed by RNA sequencing (TRAP-seq) to assess the response to stress in CA3 pyramidal neurons of the hippocampus. The results suggest that acute stress alters the translation of thousands of genes in CA3 pyramidal neurons, and that this response is strongly modulated by factors such as sex, genotype and a history of early life stress. However, our reanalysis of these datasets leads to different conclusions. We confirm that acute stress induces robust translational changes in a small set of genes. However, we found no evidence that either early life stress or sex have an effect on gene translation induced by acute stress. Our findings highlight the need for additional studies with adequate sample sizes and proper methods of analysis to assess the impact of stress across cell types in the brain.

Matching journals

The top 4 journals account for 50% of the predicted probability mass.

1
Neurobiology of Stress
42 papers in training set
Top 0.1%
28.7%
2
Scientific Reports
3102 papers in training set
Top 2%
15.3%
3
eneuro
389 papers in training set
Top 1%
5.0%
4
Brain, Behavior, and Immunity
105 papers in training set
Top 0.5%
4.1%
50% of probability mass above
5
The Journal of Neuroscience
928 papers in training set
Top 3%
4.1%
6
Translational Psychiatry
219 papers in training set
Top 2%
3.7%
7
Frontiers in Behavioral Neuroscience
46 papers in training set
Top 0.3%
2.4%
8
Psychoneuroendocrinology
33 papers in training set
Top 0.1%
2.2%
9
PLOS ONE
4510 papers in training set
Top 49%
2.0%
10
European Journal of Neuroscience
168 papers in training set
Top 0.3%
2.0%
11
International Journal of Molecular Sciences
453 papers in training set
Top 6%
1.9%
12
Nature Communications
4913 papers in training set
Top 53%
1.5%
13
eLife
5422 papers in training set
Top 44%
1.5%
14
Proceedings of the National Academy of Sciences
2130 papers in training set
Top 36%
1.4%
15
Frontiers in Neuroscience
223 papers in training set
Top 5%
1.3%
16
Biological Psychiatry
119 papers in training set
Top 2%
1.3%
17
iScience
1063 papers in training set
Top 21%
1.3%
18
Neuroscience
88 papers in training set
Top 2%
0.9%
19
Peer Community Journal
254 papers in training set
Top 3%
0.8%
20
Journal of Neuroscience Research
25 papers in training set
Top 0.4%
0.8%
21
Hippocampus
46 papers in training set
Top 0.4%
0.7%
22
Cerebral Cortex
357 papers in training set
Top 3%
0.5%
23
Molecular Neurobiology
50 papers in training set
Top 1%
0.5%
24
Frontiers in Integrative Neuroscience
12 papers in training set
Top 0.6%
0.5%
25
Biology
43 papers in training set
Top 4%
0.5%
26
Cell Reports
1338 papers in training set
Top 36%
0.5%
27
Journal of Neuroendocrinology
19 papers in training set
Top 0.5%
0.5%
28
NeuroImage
813 papers in training set
Top 7%
0.5%
29
Molecular Psychiatry
242 papers in training set
Top 4%
0.5%