Back

Bacterially produced small molecules stimulate diatom growth

Sittmann, J.; Bae, M.; Mevers, E.; Li, M.; Quinn, A.; Sriram, G.; Clardy, J.; Liu, Z.

2020-11-02 plant biology
10.1101/2020.11.02.365239 bioRxiv
Show abstract

Diatoms are photosynthetic microalgae that fix a significant fraction of the worlds carbon. Because of their photosynthetic efficiency and high-lipid content, diatoms are priority candidates for biofuel production. Here, we report that sporulating Bacillus thuringiensis when in co-culture with a marine diatom Phaeodactylum tricornutum significantly increases the diatom cell count. Bioassay-guided purification led to the identification of two diketopiperazines (DKPs) that both stimulate P. tricornutum growth and increase its lipid content. RNA-seq analysis revealed upregulation of a small set of P. tricornutum genes involved in iron starvation response and nutrient recycling when DKP was added to the diatom culture. This work demonstrates that two DKPs produced by a bacterium could positively impact P. tricornutum growth and lipid content, offering new approaches to enhance P. tricornutum-based biofuel production. As increasing numbers of DKPs are isolated from marine microbes, the work gives potential clues to bacterially produced growth factors for marine microalgae. One sentence summaryTwo diketopiperazines (DKPs) produced by sporulating bacterium Bacillus thuringiensis stimulate diatom P. tricornutum growth and increase diatom lipid content.

Matching journals

The top 6 journals account for 50% of the predicted probability mass.

1
Proceedings of the National Academy of Sciences
2130 papers in training set
Top 1%
18.4%
2
Nature Communications
4913 papers in training set
Top 10%
14.6%
3
RSC Chemical Biology
32 papers in training set
Top 0.1%
6.7%
4
ACS Synthetic Biology
256 papers in training set
Top 0.7%
6.2%
5
mBio
750 papers in training set
Top 5%
3.6%
6
ACS Omega
90 papers in training set
Top 0.6%
3.2%
50% of probability mass above
7
Scientific Reports
3102 papers in training set
Top 42%
3.0%
8
Communications Biology
886 papers in training set
Top 3%
2.7%
9
Biotechnology and Bioengineering
49 papers in training set
Top 0.3%
2.6%
10
RSC Advances
18 papers in training set
Top 0.5%
1.9%
11
Metabolic Engineering
68 papers in training set
Top 0.4%
1.8%
12
Journal of the American Chemical Society
199 papers in training set
Top 3%
1.7%
13
Angewandte Chemie International Edition
81 papers in training set
Top 2%
1.6%
14
Biochemistry
130 papers in training set
Top 0.9%
1.6%
15
Science Advances
1098 papers in training set
Top 22%
1.3%
16
eLife
5422 papers in training set
Top 47%
1.3%
17
Journal of Medicinal Chemistry
68 papers in training set
Top 0.9%
1.2%
18
Science China Life Sciences
26 papers in training set
Top 1%
1.2%
19
ACS Chemical Biology
150 papers in training set
Top 1%
1.2%
20
Bioorganic & Medicinal Chemistry Letters
10 papers in training set
Top 0.3%
0.9%
21
Nature Chemical Biology
104 papers in training set
Top 3%
0.8%
22
iScience
1063 papers in training set
Top 30%
0.8%
23
The Journal of Physical Chemistry Letters
58 papers in training set
Top 2%
0.7%
24
Nature Chemistry
34 papers in training set
Top 1.0%
0.7%
25
Cell Chemical Biology
81 papers in training set
Top 4%
0.6%
26
PNAS Nexus
147 papers in training set
Top 3%
0.6%
27
PLOS ONE
4510 papers in training set
Top 72%
0.6%
28
Nature Microbiology
133 papers in training set
Top 5%
0.6%