Tapestry: validate and edit small eukaryotic genome assemblies with long reads
Davey, J. W.; Davis, S. J.; Mottram, J. C.; Ashton, P. D.
Show abstract
SummarySmall eukaryotic genome assemblies based on long reads are often close to complete, but still require validation and editing. Tapestry produces an interactive report which can be used to validate, sort and filter the contigs in a raw genome assembly, taking into account GC content, telomeres, read depths, contig alignments and read alignments. The report can be shared with collaborators and included as supplemental material in publications. AvailabilitySource code is freely available at https://github.com/johnomics/tapestry. Package is freely available in Bioconda (https://anaconda.org/bioconda/tapestry). Contactjohn.davey@york.ac.uk
Matching journals
The top 1 journal accounts for 50% of the predicted probability mass.
Similar papers in this journal
Similar papers in this journal
- MoGAAAP: A modular Snakemake workflow for automated genome assembly and annotation with quality assessment 96%
- EASYstrata: An All-in-One Workflow for Genome Annotation and Genomic Divergence Analysis 96%
- iLoci: Robust evaluation of genome content and organization for provisional and mature genome assemblies 95%
Similar papers in this journal
"Similar papers" are the closest papers from that journal in the model's embedding space. They show what the match is built on, but the ranking comes mostly from a classifier over the whole training set, not from these examples alone.