Back

Estimating Spot Prevalence of COVID-19 from Daily Death Data in Italy

Raheem, A.

2020-03-20 epidemiology
10.1101/2020.03.17.20037697 medRxiv
Show abstract

COVID-19 is an emerging infectious disease which has been declared a pandemic by the World Health Organisation. Due to limited testing capacity for this new virus, variable symptomatology the majority of infected showing non-specific mild or no symptoms it is likely current prevalence data is an underestimate. MethodsWe present an estimate of the number of cases of COVID-19 compared to the number of confirmed case in Italy based on the daily reported deaths and information about the incubation period, time from symptom onset to death and reported case fatality rate. ResultsOur model predicts that on the 31st of January 2020 when the first 3 infected cases had been identified by Italian authorise there were already nearly 30 cases in Italy, and by the 24th of February 2020 only 0.5% cases had been detected and confirmed by Italian authorities. While official statistics had 132 confirmed case we believe a more accurate estimate would be closer to 26000. With a case-doubling period of about 2.5 days.

Matching journals

The top 8 journals account for 50% of the predicted probability mass.

1
Eurosurveillance
80 papers in training set
Top 0.1%
26.3%
2
Journal of Infection
71 papers in training set
Top 0.3%
4.7%
3
BMC Infectious Diseases
118 papers in training set
Top 0.8%
4.0%
4
PLOS ONE
4510 papers in training set
Top 37%
3.7%
5
Epidemiology and Infection
84 papers in training set
Top 0.5%
3.6%
6
The American Journal of Tropical Medicine and Hygiene
60 papers in training set
Top 1%
3.6%
7
Journal of Medical Virology
137 papers in training set
Top 1%
2.9%
8
Scientific Reports
3102 papers in training set
Top 45%
2.6%
50% of probability mass above
9
Travel Medicine and Infectious Disease
15 papers in training set
Top 0.1%
2.4%
10
Nature Communications
4913 papers in training set
Top 46%
2.1%
11
Wellcome Open Research
57 papers in training set
Top 0.6%
2.1%
12
BMC Medicine
163 papers in training set
Top 3%
1.9%
13
Swiss Medical Weekly
12 papers in training set
Top 0.1%
1.9%
14
Clinical Microbiology and Infection
60 papers in training set
Top 0.5%
1.8%
15
Clinical Infectious Diseases
231 papers in training set
Top 3%
1.7%
16
Frontiers in Public Health
140 papers in training set
Top 5%
1.7%
17
International Journal of Infectious Diseases
126 papers in training set
Top 2%
1.5%
18
Frontiers in Medicine
113 papers in training set
Top 4%
1.4%
19
Emerging Infectious Diseases
103 papers in training set
Top 2%
1.2%
20
Journal of Travel Medicine
18 papers in training set
Top 0.1%
1.2%
21
Transboundary and Emerging Diseases
34 papers in training set
Top 0.5%
1.1%
22
Epidemics
104 papers in training set
Top 1%
1.0%
23
BMJ Open
554 papers in training set
Top 11%
1.0%
24
The Journal of Infectious Diseases
182 papers in training set
Top 4%
1.0%
25
Vaccines
196 papers in training set
Top 2%
1.0%
26
The Lancet Microbe
43 papers in training set
Top 1.0%
0.9%
27
Emerging Microbes & Infections
74 papers in training set
Top 1%
0.9%
28
Microorganisms
101 papers in training set
Top 2%
0.8%
29
PLOS Computational Biology
1633 papers in training set
Top 23%
0.8%
30
BMJ
49 papers in training set
Top 1%
0.8%