Back

A Bayesian Generative Model of Vestibular Afferent Neuron Spiking

Paulin, M.; Hoffman, L. F.; Pullar, K. F.

2020-02-04 neuroscience
10.1101/2020.02.03.933150 bioRxiv
Show abstract

Using an information criterion to evaluate models fitted to spike train data from chinchilla semicircular canal afferent neurons, we found that the superficially complex functional organization of the canal nerve branch can be accurately quantified in an elegant mathematical model with only three free parameters. Spontaneous spike trains are samples from stationary renewal processes whose interval distributions are Exwald distributions, convolutions of Inverse Gaussian and Exponential distributions. We show that a neuronal membrane compartment is a natural computer for calculating parameter likelihoods given samples from a point process with such a distribution, which may facilitate fast, accurate, efficient Bayesian neural computation for estimating the kinematic state of the head. The model suggests that Bayesian neural computation is an aspect of a more general principle that has driven the evolution of nervous system design, the energy efficiency of biological information processing. Significance StatementNervous systems ought to have evolved to be Bayesian, because Bayesian inference allows statistically optimal evidence-based decisions and actions. A variety of circumstantial evidence suggests that animal nervous systems are indeed capable of Bayesian inference, but it is unclear how they could do this. We have identified a simple, accurate generative model of vestibular semicircular canal afferent neuron spike trains. If the brain is a Bayesian observer and a Bayes-optimal decision maker, then the initial stage of processing vestibular information must be to compute the posterior density of head kinematic state given sense data of this form. The model suggests how neurons could do this. Head kinematic state estimation given point-process inertial data is a well-defined dynamical inference problem whose solution formed a foundation for vertebrate brain evolution. The new model provides a foundation for developing realistic, testable spiking neuron models of dynamical state estimation in the vestibulo-cerebellum, and other parts of the Bayesian brain.

Matching journals

The top 5 journals account for 50% of the predicted probability mass.

1
eneuro
439 papers in training set
Top 0.1%
13.0%
2
Journal of Neurophysiology
302 papers in training set
Top 0.3%
12.2%
3
Journal of Computational Neuroscience
29 papers in training set
Top 0.1%
10.9%
4
PLOS Computational Biology
1863 papers in training set
Top 3%
10.0%
5
Biological Cybernetics
15 papers in training set
Top 0.1%
8.1%
50% of probability mass above
6
The Journal of Neuroscience
1025 papers in training set
Top 4%
4.5%
7
eLife
5828 papers in training set
Top 40%
2.5%
8
Neuroscience
97 papers in training set
Top 0.5%
2.5%
9
Neural Computation
39 papers in training set
Top 0.3%
2.5%
10
Hearing Research
54 papers in training set
Top 0.2%
2.2%
11
Hippocampus
56 papers in training set
Top 0.3%
1.8%
12
Frontiers in Neuroscience
256 papers in training set
Top 3%
1.8%
13
Scientific Reports
3612 papers in training set
Top 58%
1.5%
14
PLOS ONE
5266 papers in training set
Top 51%
1.5%
15
European Journal of Neuroscience
189 papers in training set
Top 2%
1.4%
16
Vision Research
29 papers in training set
Top 0.2%
1.4%
17
Journal of Neural Engineering
221 papers in training set
Top 2%
1.2%
18
Bulletin of Mathematical Biology
92 papers in training set
Top 1%
1.2%
19
The Journal of Physiology
150 papers in training set
Top 2%
1.2%
20
Frontiers in Computational Neuroscience
60 papers in training set
Top 1.0%
1.1%
21
Journal of Neuroscience Methods
122 papers in training set
Top 1%
1.1%
22
Neural Networks
35 papers in training set
Top 0.7%
0.6%
23
Frontiers in Synaptic Neuroscience
17 papers in training set
Top 0.2%
0.6%
24
PeerJ
308 papers in training set
Top 12%
0.6%
25
Journal of the Association for Research in Otolaryngology
15 papers in training set
Top 0.2%
0.6%