Back

ShearFAST: a user-friendly in vitro toolset for high throughput, inexpensive fluid shear stress experiments.

Smith, T. B.; De Nunzio, A. M.; Patel, K.; Munford, H.; Alam, T.; Powell, O.; Heneghan, N.; Ready, A.; Nath, J.; Ludwig, C.

2020-02-02 cell biology
10.1101/2020.01.31.929513 bioRxiv
Show abstract

Fluid shear stress is a key modulator of cellular physiology in vitro and in vivo, but its effects are under-investigated due to requirements for complicated induction methods. Herein we report the validation of ShearFAST; a smartphone application that measures the rocking profile on a standard laboratory cell rocker and calculates the resulting shear stress arising in tissue culture plates. ShearFAST measured rocking profiles were validated against a graphical analysis and also against measures reported by an 8-camera motion tracking system. ShearFAST angle assessments correlated well with both analyses (r [≥]0.99, p [≤]0.001) with no significant differences in pitch detected across the range of rocking angles tested. Rocking frequency assessment by ShearFAST also correlated well when compared to the two independent validatory techniques (r [≥]0.99, p [≤]0.0001), with excellent reproducibility between ShearFAST and video analysis (mean frequency measurement difference of 0.006 {+/-} 0.005Hz) and motion capture analysis (mean frequency measurement difference of 0.008 {+/-} 0.012Hz) These data make the ShearFAST assisted cell rocker model make it an attractive approach for economical, high throughput fluid shear stress experiments. O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=109 SRC="FIGDIR/small/929513v3_ufig1.gif" ALT="Figure 1"> View larger version (18K): org.highwire.dtl.DTLVardef@1d8c1eborg.highwire.dtl.DTLVardef@1a346eborg.highwire.dtl.DTLVardef@8503a8org.highwire.dtl.DTLVardef@b31a3f_HPS_FORMAT_FIGEXP M_FIG C_FIG

Matching journals

The top 8 journals account for 50% of the predicted probability mass.

1
Journal of Visualized Experiments
30 papers in training set
Top 0.1%
14.9%
2
PLOS ONE
4510 papers in training set
Top 17%
10.5%
3
Biophysical Journal
545 papers in training set
Top 0.6%
8.5%
4
Scientific Reports
3102 papers in training set
Top 18%
6.4%
5
Lab on a Chip
88 papers in training set
Top 0.3%
4.3%
6
Frontiers in Cell and Developmental Biology
218 papers in training set
Top 2%
2.8%
7
HardwareX
16 papers in training set
Top 0.1%
2.4%
8
SLAS Technology
11 papers in training set
Top 0.1%
2.4%
50% of probability mass above
9
APL Bioengineering
18 papers in training set
Top 0.1%
1.9%
10
Frontiers in Bioengineering and Biotechnology
88 papers in training set
Top 1%
1.9%
11
The European Physical Journal E
15 papers in training set
Top 0.1%
1.5%
12
Biotechnology and Bioengineering
49 papers in training set
Top 0.5%
1.3%
13
Cells
232 papers in training set
Top 3%
1.3%
14
Yeast
15 papers in training set
Top 0.1%
1.3%
15
eLife
5422 papers in training set
Top 49%
1.2%
16
Integrative Biology
13 papers in training set
Top 0.1%
1.2%
17
ACS Omega
90 papers in training set
Top 2%
1.2%
18
STAR Protocols
15 papers in training set
Top 0.1%
1.2%
19
Current Protocols
13 papers in training set
Top 0.2%
0.9%
20
iScience
1063 papers in training set
Top 29%
0.8%
21
npj Microgravity
11 papers in training set
Top 0.2%
0.8%
22
Communications Biology
886 papers in training set
Top 21%
0.8%
23
Molecular Biology of the Cell
272 papers in training set
Top 2%
0.8%
24
Methods
29 papers in training set
Top 0.6%
0.8%
25
Journal of Cell Science
353 papers in training set
Top 2%
0.8%
26
ACS Biomaterials Science & Engineering
37 papers in training set
Top 1%
0.8%
27
PNAS Nexus
147 papers in training set
Top 2%
0.8%
28
Physics of Fluids
13 papers in training set
Top 0.3%
0.8%
29
Biomaterials Science
21 papers in training set
Top 0.6%
0.7%
30
Journal of Biomechanics
57 papers in training set
Top 0.7%
0.7%