A clinical laboratory test-wide association scan of polygenic scores identifies biomarkers of psychiatric disorders

Background: Psychiatric disorders pose a significant public health burden, and their complex genetic architecture underlies multiple biological pathways, contributing to a lack of diagnostic biomarkers. Laboratory-Wide Association Studies (LabWAS) leverage electronic health record laboratory data as intermediary phenotypes to link genetic risk to physiology. Methods: Polygenic Scores (PGS) for 25 health-related, psychiatric, and substance use phenotypes were generated for individuals of African (AFR; N=10,473) and European (EUR, N=35,131) ancestry from the Penn Medicine Biobank. Laboratory data was prepared using the LabWAS pipeline, encompassing 78 laboratory tests and 6 vital signs. Linear regression models tested the association of each lab value with PGS adjusting for sex, age, and ten within-ancestry genetic principal components. Results: Four PGS were significantly associated with at least one laboratory value in AFR individuals and 22 PGS in EUR individuals. In EUR individuals, psychiatric PGS partitioned into three physiological profiles: anxiety, attention-deficit/hyperactivity disorder, major depressive disorder, and post-traumatic stress disorder shared a metabolic/inflammatory signature (higher BMI, glucose, and monocytes; lower high density lipoprotein cholesterol and oxygen saturation); anorexia nervosa, obsessive compulsive disorder, and schizophrenia were characterized by lower BMI; and bipolar disorder demonstrated a more circumscribed profile with lower electrolytes and renal makers. Substance use disorder PGS similarly clustered: tobacco use disorder and externalizing showed metabolic/inflammatory profiles; alcohol-related phenotypes showed lower red blood cell indices; and cannabis use disorder had a more circumscribed profile. Conclusions: LabWAS reveals physiologic signatures associated with genetic risk for psychiatric disorders, offering new biological insights into their pathology.