Back

Sequential- vs. density gradient- centrifugation for the isolation of mitochondria-containing extracellular vesicles

Dave, K. M.; Brady, B. T.; Govindaswamy, B.; Basudkar, V. S.; Stolz, D. B.; Soundara Manickam, D.

2026-06-17 bioengineering
10.64898/2026.06.15.732469 bioRxiv
Show abstract

A subset of extracellular vehicles (EVs) with particle diameters >200 nm, large vesicles (lEVs) contain mitochondria that increase recipient cell bioenergetics. To date, sequential centrifugation (SC) is the most reported protocol to separate lEVs from the smaller EVs (<200 nm)/exosomes. We have previously demonstrated that lEVs derived from brain endothelial cells (BECs) using the standard SC method transferred their innate mitochondria to recipient BECs, increased recipient BEC bioenergetics, reduced brain infarct volume, and improved behavioral outcomes in a mouse model of transient ischemic stroke. Despite their promising therapeutic activity, SC-isolated lEVs are likely a mixture of mitochondria-containing lEVs and non-mitochondria-containing lEVs. We hypothesized that subsequent purification of SC-isolated lEVs using density-gradient centrifugation (DGC) may yield a purer sample of mitochondria-containing lEVs. We established a DGC protocol to purify lEVs. In this pilot study, lEVs isolated using SC and DGC protocols were compared to determine their physicochemical characteristics and their effects on recipient BEC bioenergetics. SC-lEVs and DGC-lEVs both significantly restored ATP levels in OGD-injured BECs with no difference between groups. However, a Seahorse mitochondrial function assay revealed distinct functional effects: SC-lEVs did not significantly alter respiration, whereas DGC-lEVs induced a dose-dependent increase in oxygen consumption rate, indicating enhanced oxidative phosphorylation. These findings demonstrate that DGC purification yields a more mitochondria-enriched and functionally potent lEV preparation with an enhanced capacity to restore oxidative phosphorylation in ischemic BECs. Graphical abstract O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=132 SRC="FIGDIR/small/732469v1_ufig1.gif" ALT="Figure 1"> View larger version (38K): org.highwire.dtl.DTLVardef@12d5e90org.highwire.dtl.DTLVardef@19b44a5org.highwire.dtl.DTLVardef@b7ad75org.highwire.dtl.DTLVardef@dd1a3d_HPS_FORMAT_FIGEXP M_FIG C_FIG

Matching journals

The top 11 journals account for 50% of the predicted probability mass.

1
Advanced Healthcare Materials
85 papers in training set
Top 0.2%
9.8%
2
Journal of Extracellular Vesicles
55 papers in training set
Top 0.1%
9.0%
3
Molecular Pharmaceutics
16 papers in training set
Top 0.1%
5.6%
4
Journal of Extracellular Biology
22 papers in training set
Top 0.1%
4.9%
5
Small
78 papers in training set
Top 0.2%
4.4%
6
Journal of Controlled Release
44 papers in training set
Top 0.3%
3.5%
7
Analytical Chemistry
218 papers in training set
Top 1.0%
3.3%
8
Biomaterials Science
24 papers in training set
Top 0.2%
3.2%
9
Bioengineering & Translational Medicine
21 papers in training set
Top 0.1%
3.2%
10
International Journal of Molecular Sciences
494 papers in training set
Top 6%
2.2%
11
PLOS ONE
5266 papers in training set
Top 44%
2.2%
50% of probability mass above
12
Frontiers in Bioengineering and Biotechnology
98 papers in training set
Top 0.9%
2.0%
13
Journal of Biomedical Materials Research Part A
20 papers in training set
Top 0.2%
1.9%
14
Scientific Reports
3612 papers in training set
Top 50%
1.9%
15
Biomaterials
84 papers in training set
Top 0.9%
1.8%
16
Cells
249 papers in training set
Top 4%
1.4%
17
Advanced Science
286 papers in training set
Top 6%
1.1%
18
Journal of Nanobiotechnology
14 papers in training set
Top 0.2%
1.1%
19
Signal Transduction and Targeted Therapy
30 papers in training set
Top 0.4%
1.1%
20
Biotechnology and Bioengineering
53 papers in training set
Top 0.7%
1.1%
21
Journal of Biotechnology
11 papers in training set
Top 0.2%
1.1%
22
Biomaterials Advances
22 papers in training set
Top 0.5%
1.1%
23
Biotechnology Journal
11 papers in training set
Top 0.2%
1.0%
24
Pharmaceuticals
34 papers in training set
Top 1%
0.9%
25
Annals of Biomedical Engineering
37 papers in training set
Top 1%
0.9%
26
Journal of Thrombosis and Haemostasis
32 papers in training set
Top 0.4%
0.9%
27
Advanced Functional Materials
46 papers in training set
Top 1%
0.9%
28
ACS Omega
105 papers in training set
Top 3%
0.9%
29
Stem Cell Research & Therapy
30 papers in training set
Top 0.7%
0.9%
30
Biofabrication
36 papers in training set
Top 0.6%
0.9%