Back

Complex-phase stochastic modeling of mitochondrial heteroplasmy

Nurbaev, S.; Pocheshkhova, E.

2026-06-09 synthetic biology
10.64898/2026.06.07.730672 bioRxiv
Show abstract

AnnotationMitochondrial heteroplasmy --the coexistence of both wild-type and mutant copies of mitochondrial DNA (mtDNA) within a cell--is a key factor in the pathogenesis of mitochondrial diseases. Classical approaches, which rely solely on the scalar fraction of mutant DNA, fail to fully account for threshold effects, the stochastic nature of heteroplasmy dynamics, and tissue specificity. The aim of the work is to construct a complex stochastic model of heteroplasmy dynamics, which for the first time combines the effects of selection, genetic drift, migration of mitochondrial genomes between tissues and threshold mechanisms of pathology development, for a quantitative assessment of the risk of mitochondrial diseases. In this paper, we propose a complex-phase formalism in which the state of a cells mitochondrial genome is described by a complex number Z = a + ib, where a and b are the absolute numbers of normal and mutant mtDNA copies, respectively. This approach naturally combines information on copy number and heteroplasmy level, and the argument{phi} = arctan (b / a) is interpreted as a phase characterizing the mutant load. Based on this formalism, we developed a stochastic model of tissue dynamics that includes the processes of selection, genetic drift, and intertissue migration of mitochondrial genomes. Using Monte Carlo methods (1000 simulations), we demonstrated that neuronal tissues are characterized by high heteroplasmy variability and a significant probability of reaching a pathological threshold even with a relatively low systemic mutant load. Kaplan-Meier survival analysis demonstrates that the development of pathology is probabilistic and can be described as a time -to-event process . The proposed approach enables quantitative assessment of the individual risk of developing mitochondrial diseases and opens the door to personalized prognosis.

Matching journals

The top 6 journals account for 50% of the predicted probability mass.

1
Journal of Theoretical Biology
162 papers in training set
Top 0.1%
12.0%
2
Journal of The Royal Society Interface
235 papers in training set
Top 0.2%
10.7%
3
PLOS ONE
5266 papers in training set
Top 20%
9.0%
4
Physical Review E
112 papers in training set
Top 0.1%
8.0%
5
PLOS Computational Biology
1863 papers in training set
Top 5%
7.3%
6
Scientific Reports
3612 papers in training set
Top 18%
5.2%
50% of probability mass above
7
npj Systems Biology and Applications
125 papers in training set
Top 0.5%
3.3%
8
Genes
144 papers in training set
Top 0.8%
3.3%
9
Journal of Mathematical Biology
40 papers in training set
Top 0.2%
2.7%
10
International Journal of Molecular Sciences
494 papers in training set
Top 5%
2.5%
11
Nature Communications
5641 papers in training set
Top 40%
2.4%
12
BMC Bioinformatics
457 papers in training set
Top 3%
2.4%
13
Physical Biology
46 papers in training set
Top 0.3%
2.4%
14
Bulletin of Mathematical Biology
92 papers in training set
Top 0.8%
1.7%
15
Nucleic Acids Research
1281 papers in training set
Top 10%
1.4%
16
Royal Society Open Science
214 papers in training set
Top 4%
1.4%
17
Biosystems
31 papers in training set
Top 0.3%
1.3%
18
Frontiers in Human Neuroscience
77 papers in training set
Top 1%
1.1%
19
ACS Synthetic Biology
287 papers in training set
Top 2%
1.1%
20
Communications Biology
993 papers in training set
Top 24%
1.1%
21
The Annals of Applied Statistics
19 papers in training set
Top 0.2%
1.1%
22
IFAC-PapersOnLine
13 papers in training set
Top 0.2%
1.0%
23
Life
29 papers in training set
Top 0.8%
0.9%
24
Computational and Structural Biotechnology Journal
242 papers in training set
Top 7%
0.9%
25
Bioinformatics
1204 papers in training set
Top 9%
0.9%
26
Frontiers in Molecular Biosciences
102 papers in training set
Top 2%
0.9%
27
PeerJ
308 papers in training set
Top 11%
0.9%
28
Biology of the Cell
11 papers in training set
Top 0.1%
0.6%
29
The European Physical Journal E
14 papers in training set
Top 0.2%
0.6%
30
iScience
1154 papers in training set
Top 39%
0.6%