Back

Widespread circulation of West Nile and Usutu viruses in sedentary and migratory avifauna: A Two-Year Study (2024-2025) of active surveillance in South of France

Beaubaton, R.; Revel, J.; Pigeyre, L.; Lepeule, A.; Joly, J.; de Franceschi, C.; Charmantier, A.; Vollot, B.; Simonin, Y.

2026-05-21 microbiology
10.64898/2026.05.21.726855 bioRxiv
Show abstract

West Nile virus (WNV) and Usutu virus (USUV) are neurotropic Orthoflaviviruses sharing a similar enzootic transmission cycle primarily involving Culex pipiens mosquitoes as vectors and birds as amplifying hosts. First identified in Africa, both viruses established endemicity across Europe over the past two decades, most likely introduced and spread by migratory bird species along Mediterranean flyways. In avian species, infection outcomes range from subclinical to fatal neuroinvasive disease, varying by viral strain, host immunity, and species susceptibility. Southern France emerges as a key hotspot for the circulation of these viruses, supported by diverse avian habitats conducive to year-round viral maintenance. This study investigated the prevalence of WNV and USUV in more than 2500 sedentary and migratory wild birds from these regions during 2024-2025 using molecular surveillance. Samples were collected using mist net and bird boxes, across multiple passerine and non-passerine taxa, spanning wetlands, urban fringes, and agricultural zones. Our analyses revealed widespread viral circulation across diverse species, mainly among passerines such as great tits, house sparrows, and barn swallows with USUV detected at higher rates than WNV in both study years. Overall prevalence was markedly higher in 2024 than in 2025, potentially reflecting climatic or ecological drivers. Migratory individuals likely seed viral introductions during seasonal passages, whereas resident populations sustain local enzootic cycles, facilitating overwintering persistence. These results highlight the pivotal role of mixed avifauna in arbovirus dynamics within Mediterranean Europe and emphasize the necessity for integrated, year-round surveillance targeting high-risk species and habitats. Enhanced monitoring will aid in predicting spillover risks and informing vector control strategies to mitigate zoonotic threats.

Matching journals

The top 8 journals account for 50% of the predicted probability mass.

1
Viruses
318 papers in training set
Top 0.3%
12.4%
2
Emerging Infectious Diseases
103 papers in training set
Top 0.1%
10.0%
3
Nature Communications
4913 papers in training set
Top 27%
6.8%
4
The Lancet Infectious Diseases
71 papers in training set
Top 0.3%
6.3%
5
One Health
29 papers in training set
Top 0.2%
4.8%
6
Emerging Microbes & Infections
74 papers in training set
Top 0.2%
4.8%
7
PLOS Pathogens
721 papers in training set
Top 3%
4.8%
8
PLOS Neglected Tropical Diseases
378 papers in training set
Top 2%
3.6%
50% of probability mass above
9
Journal of General Virology
46 papers in training set
Top 0.2%
3.6%
10
Journal of Virology
456 papers in training set
Top 1%
3.6%
11
Transboundary and Emerging Diseases
34 papers in training set
Top 0.3%
1.9%
12
Ticks and Tick-borne Diseases
11 papers in training set
Top 0.1%
1.9%
13
Journal of Infection
71 papers in training set
Top 1%
1.7%
14
Virus Evolution
140 papers in training set
Top 0.8%
1.7%
15
PLOS ONE
4510 papers in training set
Top 54%
1.7%
16
Scientific Reports
3102 papers in training set
Top 62%
1.5%
17
Frontiers in Microbiology
375 papers in training set
Top 6%
1.5%
18
Journal of Medical Virology
137 papers in training set
Top 3%
1.3%
19
The American Journal of Tropical Medicine and Hygiene
60 papers in training set
Top 3%
1.1%
20
PLOS Biology
408 papers in training set
Top 15%
1.1%
21
BMC Infectious Diseases
118 papers in training set
Top 4%
0.9%
22
Microbiology Spectrum
435 papers in training set
Top 4%
0.9%
23
Peer Community Journal
254 papers in training set
Top 3%
0.9%
24
mSphere
281 papers in training set
Top 5%
0.9%
25
Journal of Travel Medicine
18 papers in training set
Top 0.2%
0.8%
26
Genome Medicine
154 papers in training set
Top 8%
0.8%
27
Nature Medicine
117 papers in training set
Top 5%
0.7%
28
The Journal of Infectious Diseases
182 papers in training set
Top 5%
0.7%
29
Communications Biology
886 papers in training set
Top 24%
0.7%
30
Infectious Diseases
14 papers in training set
Top 0.3%
0.7%