Plasma proteomics improves prediction of recurrent cardiovascular events
Liu, Y.; Foguet, C.; Ben-Eghan, C.; Persyn, E.; Richards, M.; Wu, Z.; Lambert, S. A.; Butterworth, A. S.; Wood, A.; Di Angelantonio, E.; Inouye, M.; Ritchie, S. C.
Show abstract
Background and AimsDespite treatment, patients with established atherosclerotic cardiovascular disease (ASCVD) are at high risk of recurrent events. Existing clinical risk scores for recurrence provide only moderate predictive performance and rely largely on the same conventional risk factors used to predict disease onset. Proteomics is a promising source of new biomarkers but the technologies need focused use cases in order to achieve utility and implementation. We aimed to determine whether plasma proteomics improves prediction of recurrent cardiovascular events beyond established clinical risk models in secondary prevention in a population-scale cohort. MethodsPlasma proteomic profiles from [~]9,300 participants in the UK Biobank with established ASCVD at baseline were analysed using machine learning methods to derive and evaluate proteomic predictors of recurrent cardiovascular events. The top performing model comprised proteins with non-zero weights (full protein score). Predictive performance of the proteomic predictors, an established clinical risk score (SMART2), and their combination was evaluated across six pre-defined testing datasets representing multiple ethnic and geographic groups. A parsimonious set of proteins with existing clinical-grade enzyme-linked immunosorbent assays (ELISAs) available was then derived. ResultsThe full protein score achieved higher performance for recurrent ASCVD than the SMART2 risk score across all ethnic and geographic subgroups (mean C-index 0.743 vs 0.653). Adding the full protein score to SMART2 improved discrimination, with the largest increase in White Irish participants ({Delta}C-index, 0.140; 95% CI, 0.074-0.205; P<0.001). However, adding SMART2 to the protein score provided minimal additional value. The parsimonious score preserved most of the discrimination of the full protein model with C-indices of the recurrent ASCVD risk model comprising age, sex and the parsimonious protein score being nearly identical to the full protein model in the largest testing set (0.723 vs 0.728 for White British in England and Wales). The parsimonious protein score showed a marked gradient of risk with the top, middle and bottom quintiles showing 10-year recurrent ASCVD rates of [~]27.4%, [~]9.6% and [~]2.4%, respectively. ConclusionsIn patients with established ASCVD, plasma protein measurements substantially improved prediction of recurrent events beyond conventional clinical risk factors, supporting their potential as a complementary tool to guide secondary prevention of cardiovascular disease.
Matching journals
The top 9 journals account for 50% of the predicted probability mass.
Similar papers in this journal
- Augmenting clinical risk prediction of cardiovascular disease through protein and epigenetic biomarkers 94%
- Coronary Artery Disease Risk of Familial Hypercholesterolemia Genetic Variants Independent of Historical Cholesterol Exposure 92%
- A common polymorphism that protects from cardiovascular disease increases fibronectin processing and secretion 92%
Similar papers in this journal
- Aptamer Proteomics for Biomarker Discovery in Heart Failure with Reduced Ejection Fraction 93%
- Conserved and Divergent Modulation of Calcification in Atherosclerosis and Aortic Valve Disease by Tissue Extracellular Vesicles 92%
- Genetically Predicted IL-18 Inhibition and Risk of Cardiovascular Events: A Mendelian Randomization Study 92%
Similar papers in this journal
- Large-scale plasma proteomics in the UK Biobank modestly improves prediction of major cardiovascular events in a population without previous cardiovascular disease 96%
- Metabolomics data improve 10-year cardiovascular risk prediction with the SCORE2 algorithm for the general population without cardiovascular disease or diabetes 94%
- Familial risk of myocardial infarction with non-obstructive and obstructive coronary arteries-A nation-wide cohort study 90%
Similar papers in this journal
- Integrating multi-modal omics to identify therapeutic atherosclerosis pathways for coronary heart disease 92%
- Distinct metabolic features of genetic liability to type 2 diabetes and coronary artery disease: a reverse Mendelian randomization study 91%
- 1 H-NMR metabolomics-based surrogates to impute common clinical risk factors and endpoints 91%
"Similar papers" are the closest papers from that journal in the model's embedding space. They show what the match is built on, but the ranking comes mostly from a classifier over the whole training set, not from these examples alone.