Transposable elements as new players to decipher sex differences in Parkinson Disease
Gordillo-Gonzalez, F.; Galiana-Rosello, C.; Grillo-Risco, R.; Soler-Saez, I.; Hidalgo, M. R.; Siomi, H.; Kobayashi-Ishihara, M.; Garcia-Garcia, F.
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We present a novel integrative analysis of transposable elements (TEs) in 4 single cell RNA-seq (scRNA-seq) datasets of postmortem substantia nigra pars compacta samples of Parkinson Disease (PD) patients matched healthy controls, with the objective of building a cell-type specific trustworthy atlas of TEs that may clarify the role of TEs in sex differences in PD. We have used the soloTE tool to evaluate the TEs expression changes across all snRNA-seq studies identified in our previous systematic review, and then integrated the results using meta-analysis techniques. Finally, we evaluated the possible associations between TEs and protein coding genes by integrating our previous results in this matter with the information of TEs obtained, in order to propose the possible action mechanism by which some of the TEs contribute to PD.
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