RevelioPlots: An Interactive Web Application for Fast AI-Based Protein Models Quality Assessment
Fernandes, L. L. d. S.; Azevedo, A. H. D. d.; Franca, J. V. S. d.; Lima, J. P. M. S.
Show abstract
High-accuracy protein structure prediction by deep learning requires rigorous model quality assessment, a process currently hampered by fragmented, non-interactive tools designed for older experimental data formats. We present RevelioPlots, an open-source, interactive web application (Python/Streamlit) that simplifies and streamlines the assessment of AI-predicted protein structure quality. Its key feature is the combination of statistical pLDDT score analysis (mean, median, box plots) with an interactive, confidence-colored Ramachandran plot. This integration establishes a direct visual link between a models predicted local reliability (pLDDT) and its stereochemical feasibility (backbone geometry). RevelioPlots handles both individual and batch-uploaded models, intelligently falling back to B-factors as a proxy for pLDDT values. Using example model proteins, we demonstrated the tools effectiveness, revealing differences in reliability and a clear visual correlation between regions of low pLDDT scores and residues in sterically disallowed regions. By unifying these critical metrics, RevelioPlots empowers non-experienced researchers to quickly and intuitively assess, compare, and interpret structural model quality, enabling a more confident and integrated use of predicted data. AvailabilityRevelioPlots is available at revelioplots.streamlit.app, with the source code publicly accessible on GitHub at https://github.com/evomol-lab/RevelioPlots.
Matching journals
The top 3 journals account for 50% of the predicted probability mass.
Similar papers in this journal
Similar papers in this journal
Similar papers in this journal
Similar papers in this journal
- SpikeScape: A Tool for Analyzing Structural Diversity in Experimental Structures of the SARS-CoV-2 Spike Glycoprotein 97%
- Fast Local Alignment of Protein Pockets (FLAPP): A system-compiled program for large-scale binding site alignment 95%
- PDBminer to Find and Annotate Protein Structures for Computational Analysis 95%
"Similar papers" are the closest papers from that journal in the model's embedding space. They show what the match is built on, but the ranking comes mostly from a classifier over the whole training set, not from these examples alone.