Back

Comparing Existing Algorithms for Retrieving Pregnancy-related Adverse Event Reports

Hedfords Vidlin, S.; Giunchi, V.; K-Papai, L.; Sandberg, L.; Zaccaria, C.; Sakai, T.; Piccolo, L.; Rocca, E.; Fusaroli, M.; Trinh, N. T.

2026-02-18 public and global health
10.64898/2026.02.17.26346457 medRxiv
Show abstract

BackgroundPost-marketing surveillance is essential for complementing the safety profiles of medicinal products, especially for populations generally excluded from clinical trials such as pregnant individuals. However, the absence of a standardised pregnancy indicator in the electronic transmissions of adverse event reports hampers their correct identification in pharmacovigilance databases and complicates the study of safety concerns related to pregnancy exposures. Three recently developed rule-based algorithms with the common aim to systematically retrieve pregnancy-related reports differ in scope and are tailored to different databases (A. FAERS, B. EudraVigilance, C. VigiBase). AimTo compare the design and outputs of the three pregnancy algorithms. MethodsThis study was a collaboration among the authors of the three pregnancy algorithms. We harmonised their rules, implemented them in an R package to enable execution in both VigiBase and FAERS, and analysed key characteristics of reports flagged by each algorithm. ResultsThe pregnancy algorithms A, B, and C flagged 235653, 279515, and 446957 reports respectively in VigiBase, and 265015, 260734, 350479 in FAERS. Reports exclusively retrieved by each algorithm (994, 3248, and 142324 in VigiBase, and 1528, 1100, and 59643 in FAERS) were mostly explained by Algorithm A having no age restriction, Algorithm B excluding normal pregnancy and ineffective contraception, and Algorithm C excluding paternal exposure. ConclusionsDifferences in flagging were largely related to varying scopes. Understanding commonalities and differences is crucial for empowering professionals working with pregnancy-related pharmacovigilance to select and use the most appropriate algorithm for their specific needs. Key pointsO_LIThree independently developed algorithms were designed to retrieve pregnancy-related adverse event reports and support research into pregnancy-specific safety concerns. C_LIO_LIBy applying these algorithms to VigiBase and FAERS, we highlighted overlaps and differences in the reports they flag, reflecting heterogeneous scope and implementation. C_LIO_LIAwareness of these distinctions is essential to select and apply the most suitable algorithm for their specific needs. C_LI

Matching journals

The top 6 journals account for 50% of the predicted probability mass.

1
Pharmacoepidemiology and Drug Safety
13 papers in training set
Top 0.1%
18.5%
2
Journal of the American Medical Informatics Association
61 papers in training set
Top 0.3%
10.3%
3
npj Digital Medicine
97 papers in training set
Top 0.8%
6.3%
4
BMJ Open
554 papers in training set
Top 3%
6.3%
5
PLOS ONE
4510 papers in training set
Top 32%
4.8%
6
Journal of Medical Internet Research
85 papers in training set
Top 1%
4.3%
50% of probability mass above
7
BMC Medicine
163 papers in training set
Top 1%
3.6%
8
Frontiers in Pharmacology
100 papers in training set
Top 0.9%
3.6%
9
British Journal of General Practice
22 papers in training set
Top 0.2%
3.0%
10
JAMA Network Open
127 papers in training set
Top 1%
2.9%
11
Research Synthesis Methods
20 papers in training set
Top 0.1%
2.7%
12
BMJ Global Health
98 papers in training set
Top 1%
2.6%
13
BMC Medical Research Methodology
43 papers in training set
Top 0.4%
2.4%
14
British Journal of Clinical Pharmacology
21 papers in training set
Top 0.2%
2.4%
15
The American Journal of Tropical Medicine and Hygiene
60 papers in training set
Top 2%
2.3%
16
Journal of Personalized Medicine
28 papers in training set
Top 0.2%
2.1%
17
Scientific Data
174 papers in training set
Top 0.8%
2.1%
18
BMC Medical Informatics and Decision Making
39 papers in training set
Top 2%
1.3%
19
JMIR Public Health and Surveillance
45 papers in training set
Top 3%
1.2%
20
BMC Health Services Research
42 papers in training set
Top 2%
0.8%
21
JMIRx Med
31 papers in training set
Top 2%
0.8%
22
Journal of Biomedical Informatics
45 papers in training set
Top 2%
0.6%