Back

Neuroanatomy of substantia nigra and ventral tegmental area dopaminergic, and dorsal raphe serotonergic circuits in the human brain using T1-weighted and diffusion magnetic resonance imaging: A morphometric pilot study with estimate of reliability

makris, n.; Rushmore, R. J.; Haggerty, K.; Papadimitriou, G.; Dougherty, D.; Kubicki, M.; Gonzalez-Mora, J. L. J.; Pallanti, S.; Castaneyra-Perdomo, A.; Yeterian, E.; Toppa, P. H.

2026-02-13 neuroscience
10.64898/2026.02.12.705574 bioRxiv
Show abstract

IntroductionWe present here a methodology for morphometric analysis of the substantia nigra (SN), the ventral tegmental area (VTA), the dorsal raphe nucleus (DRN) and their respective structural brain circuits. MethodsOur analyses were based on multimodal T1-weighted MRI and diffusion MRI (dMRI) segmentation and tractography in 12 human subjects drawn from the Human Connectome Project (HCP) repository. ResultsWe were able to demonstrate strong connections of the SN, VTA and DRN with several brain regions, in particular the dorsolateral prefrontal cortex (DLPFC) and the cerebellum. More specifically, we created comprehensive visualizations of the SN and VTA dopaminergic as well as the DRN serotonergic structural circuits in the human brain, which, although preliminary, demonstrate the potential of multimodal neuroimaging to investigate these circuits quantitatively in clinical conditions. Finally, we created a pilot dataset for the most frequently observed structural connections, specifically those that were present more than 92% of the time among all subjects. Discussion This pilot morphometric report examines the structural circuits of the SN, VTA and DRN, which are critically involved in several biobehaviors and clinical conditions such as addiction, stress, Parkinsons disease (PD), schizophrenia, obsessive-compulsive disorder, post-traumatic stress disorder, attention deficit hyperactivity disorder, mood disorders, COVID-19 and long COVID. Importantly, the strong structural connectivity of the DLPFC and cerebellum with the SN, VTA and DRN is expected to be a potential target of noninvasive neuromodulation treatments in neuropsychiatry. Our findings demonstrate the potential of current clinical multimodal neuroimaging to delineate the dopaminergic (DA) and serotonergic (5-HT) circuits in the human brain in clinical conditions.

Matching journals

The top 11 journals account for 50% of the predicted probability mass.

1
Frontiers in Psychiatry
83 papers in training set
Top 0.2%
10.4%
2
Translational Psychiatry
219 papers in training set
Top 1%
6.3%
3
NeuroImage: Clinical
132 papers in training set
Top 0.8%
6.3%
4
Human Brain Mapping
295 papers in training set
Top 1%
4.8%
5
PLOS ONE
4510 papers in training set
Top 36%
3.9%
6
Biological Psychiatry: Cognitive Neuroscience and Neuroimaging
62 papers in training set
Top 0.4%
3.9%
7
Brain and Behavior
37 papers in training set
Top 0.1%
3.6%
8
Progress in Neuro-Psychopharmacology and Biological Psychiatry
36 papers in training set
Top 0.2%
3.6%
9
Scientific Reports
3102 papers in training set
Top 40%
3.2%
10
Journal of Affective Disorders
81 papers in training set
Top 0.7%
3.1%
11
Brain Imaging and Behavior
14 papers in training set
Top 0.1%
2.6%
50% of probability mass above
12
Psychiatry Research: Neuroimaging
16 papers in training set
Top 0.1%
2.3%
13
Biological Psychiatry
119 papers in training set
Top 1%
1.9%
14
Journal of Psychopharmacology
14 papers in training set
Top 0.2%
1.9%
15
Frontiers in Neuroscience
223 papers in training set
Top 3%
1.9%
16
NeuroImage
813 papers in training set
Top 4%
1.9%
17
Neuroinformatics
40 papers in training set
Top 0.5%
1.7%
18
Brain Sciences
52 papers in training set
Top 0.7%
1.7%
19
Schizophrenia Research
29 papers in training set
Top 0.3%
1.7%
20
Brain Stimulation
112 papers in training set
Top 0.9%
1.5%
21
Neuropsychopharmacology
134 papers in training set
Top 2%
1.3%
22
Addiction Biology
47 papers in training set
Top 0.6%
1.3%
23
Psychiatry Research
35 papers in training set
Top 1%
1.3%
24
Frontiers in Neuroinformatics
38 papers in training set
Top 0.5%
1.2%
25
European Journal of Neuroscience
168 papers in training set
Top 0.9%
1.1%
26
Frontiers in Neuroimaging
11 papers in training set
Top 0.3%
0.9%
27
eneuro
389 papers in training set
Top 8%
0.9%
28
Behavioural Brain Research
70 papers in training set
Top 0.9%
0.9%
29
Neuroscience Letters
28 papers in training set
Top 1%
0.8%
30
Frontiers in Human Neuroscience
67 papers in training set
Top 2%
0.8%